Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1384
         (728 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122081-1|AAM52593.1|  341|Drosophila melanogaster AT23411p pro...    29   6.5  
AE014296-2892|AAF49353.2| 1324|Drosophila melanogaster CG7692-PA...    29   6.5  
AE014297-3736|AAF56416.3|  993|Drosophila melanogaster CG13654-P...    29   8.6  

>AY122081-1|AAM52593.1|  341|Drosophila melanogaster AT23411p
           protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 725 RGIRVRFRRGSLRNGYHIQGRQQARKLPTPGTGR 624
           RG+RVR +R ++ N Y+ Q R+  R+L     G+
Sbjct: 162 RGVRVRVKRTNMANFYNDQTRRSQRRLTASLNGQ 195


>AE014296-2892|AAF49353.2| 1324|Drosophila melanogaster CG7692-PA
            protein.
          Length = 1324

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 725  RGIRVRFRRGSLRNGYHIQGRQQARKLPTPGTGR 624
            RG+RVR +R ++ N Y+ Q R+  R+L     G+
Sbjct: 1145 RGVRVRVKRTNMANFYNDQTRRSQRRLTASLNGQ 1178


>AE014297-3736|AAF56416.3|  993|Drosophila melanogaster CG13654-PA
           protein.
          Length = 993

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 655 RAN-YPLPARGGSDEK*RYGTLTRPRNRNEYTLNI-LTRNNWRASLV 521
           RAN YPL   GG+D    +GT+ RP    E ++   +  N+W  +L+
Sbjct: 352 RANGYPL---GGTDHNHGHGTIIRPNQTTEISIQFGVQPNSWHYALL 395


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,867,405
Number of Sequences: 53049
Number of extensions: 712436
Number of successful extensions: 1733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)