Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1384
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    30   1.4  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    29   3.2  
At5g38320.1 68418.m04625 expressed protein  ; expression support...    29   4.2  
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       29   4.2  
At4g10890.1 68417.m01772 expressed protein                             28   7.3  
At2g43620.1 68415.m05422 chitinase, putative similar to basic en...    28   7.3  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   9.6  
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    27   9.6  

>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 496 GAGITRLLAPDLPSNCSSLKYLKCTHSDYE 585
           G   +  L+ DL +NCSSL+YL  +H+  E
Sbjct: 157 GNSFSGTLSDDLFNNCSSLRYLSLSHNHLE 186


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 209 EPRSYSIIPCTKYSSTFLARFEHSNLFKVKLSAHLDTHR 325
           EP    ++ C K S  F + FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 116 RSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSI-IPCTKYSST 256
           RSK       +  P +IPI  +  VL+  +I  + Y + +P   Y+ST
Sbjct: 85  RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 722 GIRVRFRRGSLRNGYHIQGRQQARKLPTPG 633
           G R+ FRRG+     HIQ +Q   + P+PG
Sbjct: 497 GPRMGFRRGATNVQQHIQQQQLMHRNPSPG 526


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 114 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYV 1
           ++T I   +C RC+H S R K+R S   R   S++   +
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAI 232


>At2g43620.1 68415.m05422 chitinase, putative similar to basic
           endochitinase CHB4 precursor SP:Q06209 from [Brassica
           napus]
          Length = 283

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 426 CTDSAAHKCN--YELFNRNNFSIRYWSWNYAAAGTRLALQL 542
           C+ S A+ C    + + R    I  W++NY AAG  L L L
Sbjct: 166 CSPSTAYPCTPGKDYYGRGPIQIT-WNYNYGAAGKFLGLPL 205


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 77  HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 211
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 321 TEEHRDRILILNRRFLERRLT--DDMLRKRVSITADACTDSAAHKCNYELFNRNN 479
           +E H D    ++RR+LE +    DD++  R  +   +  DS+  K    L + ++
Sbjct: 38  SESHSDADSAIHRRYLEEKFAEEDDLIAARRGLRLQSMDDSSVFKRRSSLLSNSS 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,530,685
Number of Sequences: 28952
Number of extensions: 327780
Number of successful extensions: 767
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)