Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1381
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RTF4 Cluster: Putative uncharacterized protein PY0004...    34   3.5  
UniRef50_Q23863 Cluster: Histidine kinase A; n=2; Dictyostelium ...    34   3.5  

>UniRef50_Q7RTF4 Cluster: Putative uncharacterized protein PY00040;
           n=9; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY00040 - Plasmodium yoelii yoelii
          Length = 5229

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 27/104 (25%), Positives = 43/104 (41%)
 Frame = +1

Query: 205 LDSTEKSHLERLNVNMYLCLRVKK*VKERAQEFGRSNCSTINFNYNLL*SNFRKGCDTYT 384
           L   + +  + LN N YL +  K+    +       N  + N N N+  + F     T  
Sbjct: 372 LYKNDNTFKDNLNRNNYLQIIEKEIYNNQLYIIANENYKSANLNINVKNTRFTLHNKTIM 431

Query: 385 NLILYL*TSNSCILIYMYII*ISETAPTIFIKFSIQGISGAKID 516
           NLI Y     S I  ++Y+  I    P ++I   I+  SG  +D
Sbjct: 432 NLINYFTEMISSIFSFLYVYII---YPEVYISDLIEIASGINVD 472


>UniRef50_Q23863 Cluster: Histidine kinase A; n=2; Dictyostelium
           discoideum|Rep: Histidine kinase A - Dictyostelium
           discoideum (Slime mold)
          Length = 2150

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 23/59 (38%), Positives = 32/59 (54%)
 Frame = -1

Query: 322 LNNYFFQIPVLSP*LIS*HVNINTYSHLNVLNVIFR*NPK*VSSNFNN*WSPVNLNSPI 146
           LNN    +P LSP  I+ H+N++  ++ N  N+    NP   S+N NN  SP N N  I
Sbjct: 389 LNNNSSNLPPLSPRHINFHINVSNLNNNNNNNINPNNNPN-NSNNSNNNVSPRNNNHNI 446


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,537,687
Number of Sequences: 1657284
Number of extensions: 10380069
Number of successful extensions: 17217
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17209
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)