Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1381
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpa...    28   6.8  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    28   6.8  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    28   6.8  
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    28   6.8  
AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.      28   6.8  

>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 128 VCTLIRFYCQTIIYF*YLFVFNRM*VYLIWYLFFTCVFKYIF 3
           +CT+    CQ+I YF + F F+    Y    L F CV K  F
Sbjct: 76  ICTIFAVICQSIFYFCFTFYFH---PYTHLLLAF-CVSKLFF 113


>U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpase
           protein 5 protein.
          Length = 873

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 412 NSCILIYMYII*ISETAPTIFIKFSIQGISGAKIDLATIYFQKMLFYSC 558
           NS  +    I+ IS+    + + F     + +KID+ T++  +MLF  C
Sbjct: 540 NSMKMKLSVILGISQMTFGVILSFFNHTYNKSKIDIFTVFIPQMLFMGC 588


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 128 VCTLIRFYCQTIIYF*YLFVFNRM*VYLIWYLFFTCVFKYIF 3
           +CT+    CQ+I YF + F F+    Y    L F CV K  F
Sbjct: 76  ICTIFAVICQSIFYFCFTFYFH---PYTHLLLAF-CVSKLFF 113


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 128 VCTLIRFYCQTIIYF*YLFVFNRM*VYLIWYLFFTCVFKYIF 3
           +CT+    CQ+I YF + F F+    Y    L F CV K  F
Sbjct: 76  ICTIFAVICQSIFYFCFTFYFH---PYTHLLLAF-CVSKLFF 113


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 128 VCTLIRFYCQTIIYF*YLFVFNRM*VYLIWYLFFTCVFKYIF 3
           +CT+    CQ+I YF + F F+    Y    L F CV K  F
Sbjct: 76  ICTIFAVICQSIFYFCFTFYFH---PYTHLLLAF-CVSKLFF 113


>AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.
          Length = 873

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 412 NSCILIYMYII*ISETAPTIFIKFSIQGISGAKIDLATIYFQKMLFYSC 558
           NS  +    I+ IS+    + + F     + +KID+ T++  +MLF  C
Sbjct: 540 NSMKMKLSVILGISQMTFGVILSFFNHTYNKSKIDIFTVFIPQMLFMGC 588


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,073
Number of Sequences: 27780
Number of extensions: 259085
Number of successful extensions: 480
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)