Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1380
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for MG...    52   3e-06
BC048251-1|AAH48251.1|  322|Homo sapiens ZDHHC12 protein protein.      31   3.0  
AL441992-6|CAI15406.1|  210|Homo sapiens zinc finger, DHHC-type ...    31   3.0  
AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.              30   6.8  
AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.        30   6.8  

>BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for
           MGC:134704) protein.
          Length = 44

 Score = 51.6 bits (118), Expect = 3e-06
 Identities = 22/27 (81%), Positives = 22/27 (81%)
 Frame = +3

Query: 501 KKHVAMNAWLPQASYPCGNFSGTSC*K 581
           K  VAMNAW PQASYPCGNFS TSC K
Sbjct: 11  KSDVAMNAWPPQASYPCGNFSDTSCLK 37


>BC048251-1|AAH48251.1|  322|Homo sapiens ZDHHC12 protein protein.
          Length = 322

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 306 HALGRAAGGAKLPSAGLS*TPLRPKPA*PNPARICSLWSPESRE 175
           H    A  G   P++  + TP  P P  P PA +CS  SPE R+
Sbjct: 51  HLQAFAQPGTHFPTSNCTPTP--PTPVLPGPASLCSPASPELRQ 92


>AL441992-6|CAI15406.1|  210|Homo sapiens zinc finger, DHHC-type
           containing 12 protein.
          Length = 210

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 306 HALGRAAGGAKLPSAGLS*TPLRPKPA*PNPARICSLWSPESRE 175
           H    A  G   P++  + TP  P P  P PA +CS  SPE R+
Sbjct: 51  HLQAFAQPGTHFPTSNCTPTP--PTPVLPGPASLCSPASPELRQ 92


>AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.
          Length = 1032

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = -2

Query: 277 EATIRGIILNASKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 116
           E   +GI+ +   A  +++E   D  T  P       ESGGS+  D  S+ S   +ET  
Sbjct: 660 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 719

Query: 115 RSPFG 101
             P G
Sbjct: 720 SEPLG 724


>AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.
          Length = 1013

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = -2

Query: 277 EATIRGIILNASKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 116
           E   +GI+ +   A  +++E   D  T  P       ESGGS+  D  S+ S   +ET  
Sbjct: 641 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 700

Query: 115 RSPFG 101
             P G
Sbjct: 701 SEPLG 705


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,544,740
Number of Sequences: 237096
Number of extensions: 2185947
Number of successful extensions: 4492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4492
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)