Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1379
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    26   0.30 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.69 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.8  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 333 IKLMYKRDGLALTLDDENSNDGRLAYGDGKDKTSPKV 443
           IKL+ +++      DDE   + +   G+ KDK  PK+
Sbjct: 211 IKLVVEKEREKELSDDEAEEEKKEEEGEDKDKDKPKI 247


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 68  TKPQSPTPNSKTIFTTASSLPIT 136
           T   +PT +S+++ T+ SS+P T
Sbjct: 89  TSTSNPTYSSRSVMTSCSSVPTT 111


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 532 SNNPEPLTTWPTGPTASKDLRPNGPCSPLST 624
           S N  PLT  P  P+    +  NG  SP+S+
Sbjct: 111 SGNVPPLTPSPGPPSHPYTVISNGYSSPMSS 141


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 294 FPVEFRLIFAENNIKLMYK 350
           FP+++ L+F+E  + L++K
Sbjct: 701 FPIDYSLVFSETKL-LLFK 718


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,261
Number of Sequences: 336
Number of extensions: 2373
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)