Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1379
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.55
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 2.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.9
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 5.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 6.8
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 25 9.0
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 9.0
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 9.0
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.55
Identities = 21/51 (41%), Positives = 26/51 (50%)
Frame = +2
Query: 62 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNS 214
+PT S TP S TTA+S T PL N +T T A S+ +S NS
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNS 462
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 62 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRT 175
+PT S TP S TTA+S T PL N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 545 SGLFELPTSNTDSLSVHNLEVDLVVLPQRNE 453
SG +L N S+ +H+L L ++PQ N+
Sbjct: 1279 SGDIQLDDINITSIGLHDLRSRLAIIPQENQ 1309
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 511 SVFDVGSSNNPEPLTTWPTGPTASKDLRPNGPCSPLST 624
S GSS++P P T+ T T S + P G S LST
Sbjct: 97 SASTTGSSSSPLPSTS--TSCTTSTSIPPTGGSSSLST 132
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 529 SSNNPEPLTTWPTGPTASKDLRPNGPCSPLST 624
+ N PL T T T S + P G S LST
Sbjct: 158 TDTNSNPLPTTSTSCTTSTSIPPTGGSSSLST 189
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 55 SLYANETSVSDSKLEDDLY-----NSILVADYDHSVEKSKQIYEDKKSEVITNV 201
+L N S K++D L+ N L +HS K K+ YE S ++TN+
Sbjct: 738 NLMENVEEESIDKIKDILFDIHVDNLYLFPQLEHSFYKRKKNYEKALSVLVTNI 791
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 94 LEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNN 225
LE+D + ++ + ++ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 554 VNGSGLFELPTSNTDSLSVHNLEVDLVVLPQRNELPADFWTRLVLAIAVGKSA 396
VNG L E+P+ +SL H L+ ++ L FW LV + + ++
Sbjct: 32 VNGDVLLEIPSFFIESLQFHY----LINQSEKISLKLIFWNELVYLLGLNDTS 80
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 369 TLDDENSNDGRLAYGDGKDKTSPKVSWKFVPLWENNKVYFKIV 497
T DD + ++ + GKD +PK +W P+W+ K+Y +V
Sbjct: 77 TEDDSGEDSYQVEWESGKDPLAPK-NW---PMWK--KIYTLLV 113
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 67 NETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 240
+ TS + + LE V E++KQ+ K+SE++ + NKL+ N ++ +
Sbjct: 642 DSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESL 699
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 162 DLR-GQEERSHHKCRKQTHTKQQDEL 236
D+R GQEE + HT QQDEL
Sbjct: 7 DIRNGQEEDDLFSENEDNHTSQQDEL 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,891
Number of Sequences: 5004
Number of extensions: 39814
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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