Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1379
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0693 - 26334574-26336121 31 0.57
02_04_0308 - 21914924-21914975,21915031-21915211,21915413-21915695 29 3.0
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578... 28 5.3
11_06_0232 + 21559467-21559532,21559586-21560200 28 7.0
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266... 28 7.0
09_02_0408 - 8638298-8638594,8638717-8639103,8639415-8640413,864... 27 9.2
04_04_0143 - 23091613-23092467 27 9.2
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 27 9.2
02_04_0362 - 22366668-22367516 27 9.2
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 27 9.2
>11_06_0693 - 26334574-26336121
Length = 515
Score = 31.5 bits (68), Expect = 0.57
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 2 PTRKR*KPFKLFCVFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLKR 154
P R+R P +L F+ R C+P+ P SP +S SS P +PL R
Sbjct: 38 PARRR--PLELLA-FAVRHCLPSSPPSPHHHSLAALLLLSSPPPPALPLLR 85
>02_04_0308 - 21914924-21914975,21915031-21915211,21915413-21915695
Length = 171
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -1
Query: 575 VGPVGHVVNGSGLFELPTSNTDSLSVHNLEVDLVVLPQRNELPADFWT-RLVLAI 414
V PVG + SGL L T L V ++D ++ ++ EL + +T +L+LA+
Sbjct: 112 VAPVGFNITFSGLLSLATRTGLELPVMQTDIDGIIHIRKIELESFVFTCQLILAV 166
>04_04_1267 - 32257035-32257337,32257423-32257570,32257656-32257893,
32257994-32258351,32258791-32258969,32259071-32259175,
32259539-32260871
Length = 887
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +2
Query: 32 LFCVFSWRLCMPTKPQSPTPNSKTIF---TTASSLPITTIPLKRANRSTRTRRAKSSQMS 202
L C+ LC+ P + P S +F A++LP P+ A+R++ +++ + S
Sbjct: 815 LLCIHIGLLCVQDNPNNRPPMSSVVFMLENEAAALPAPIQPVYFAHRASGAKQSGGNTSS 874
Query: 203 *TNS 214
N+
Sbjct: 875 SNNN 878
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 80 SPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNS 214
+P P ++T ASS P T P + +R R RRA+++Q +S
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASS 183
>03_05_0613 +
26124714-26124857,26125692-26126330,26126455-26126695,
26126913-26127496
Length = 535
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 522 RWQFKQPRTINHMAYGANSVEGFKAQWTLQPAKY 623
+W+ K + + H+ G N+ +G W LQ Y
Sbjct: 383 KWELKHDKDMRHILLGCNNRQGI-GSWILQDINY 415
>09_02_0408 -
8638298-8638594,8638717-8639103,8639415-8640413,
8640501-8640655,8640768-8640855,8640941-8641044,
8641199-8641421,8641536-8641620,8641706-8642097,
8642962-8643150
Length = 972
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 455 ELPADFWTRLVLAIAVGKSAIVAVLIVQRQ 366
ELPAD + V+++A S ++AV ++QR+
Sbjct: 524 ELPADSFGAYVISMATAPSDVLAVELLQRE 553
>04_04_0143 - 23091613-23092467
Length = 284
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/74 (27%), Positives = 39/74 (52%)
Frame = +2
Query: 326 KQH*ADVQARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHS 505
K+ A +A RS+F V + EQ+R + + R +G+ ES ++L ++ GL++
Sbjct: 190 KKQVAQQEAERSKFLVAKAEQER-RAAIVRAEGESES-ARLISEATAAAGTGLIELRRIE 247
Query: 506 ANQYLTLAVQTTPN 547
A + + + +PN
Sbjct: 248 AAREIAAELARSPN 261
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 97 EDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVV 204
+++L+N I+V + H V I +DK+ + + V+
Sbjct: 93 KNELWNKIMVLKFSHQVLVYFDIQQDKRKDAVKKVI 128
>02_04_0362 - 22366668-22367516
Length = 282
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +2
Query: 326 KQH*ADVQARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHS 505
K+ A +A RSRF V R EQ+R + + R +G+ E+ ++L ++ GL++
Sbjct: 191 KKQVAQQEAERSRFLVARAEQER-RAAIVRAEGESEA-ARLISEATAAAGTGLIELRRIE 248
Query: 506 ANQYLTLAVQTTPN 547
A + + + +PN
Sbjct: 249 AAKEIAGELARSPN 262
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +2
Query: 386 QQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHSANQYLTLAVQT 538
Q + Q L +GQ+E+ + L++ S + + G + DC +S + V++
Sbjct: 100 QNKLQEALDLLKGQEETSAILQLESQIYYRLGRMNDCMNSYEKLQKFKVES 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,826,293
Number of Sequences: 37544
Number of extensions: 253563
Number of successful extensions: 1050
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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