Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1379
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  30   1.8  
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                29   3.1  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   28   7.1  
SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15)                27   9.4  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     27   9.4  
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               27   9.4  
SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)             27   9.4  

>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 46  FVASLYANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVIT 195
           F ASL A + S SDS  EDDL    ++ + DH   K++ + + +K +  T
Sbjct: 548 FRASLAAQQDSTSDSSSEDDL----IMDEKDHPQGKARSLSDKQKCKNTT 593


>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 355

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 347 QARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQ 478
           Q  R +F++   +QQ+WQ   R+WQ Q   +SQLE +    E Q
Sbjct: 292 QQSRQQFEL---QQQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQ 331


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 68  TKPQSPTPNSKTIFTTASSLPITTIP--LKRANRSTRTRRAKSSQ 196
           T P  PTP  K   +  +++P+T +P    +  +  +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288


>SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15)
          Length = 257

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +1

Query: 118 ILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAY 252
           I++A +D S ++S  IY+     +  NV+N+ +R   ++ M + +
Sbjct: 84  IIIAGFDKS-DRSLTIYQALPGNLEGNVINRSVRKQVIDAMNFDF 127


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 62  MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTR 172
           + T    P+ NS++  +  S LP+T+ P+KR  + TR
Sbjct: 749 LSTNHDEPS-NSRSTHSLYSPLPVTSTPVKRFRKITR 784


>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 659

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 523 VGSSNNPEPLTTWPTGPTASKDLRPNGPCSPLST 624
           VG + + +P T+ P GPT S   + + P  P ++
Sbjct: 231 VGHTTSTKPQTSSPIGPTTSTQHQTSSPIGPTTS 264


>SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)
          Length = 495

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 174 QEERSHHKCRKQTHTKQ-QDELHGVRLPLWLQGSKDIVR 287
           Q ER H K    T TK+ QD+L   R+  W +GS+ I R
Sbjct: 28  QWERVHGKLLPNTATKRRQDQLAFFRIIAWKRGSRWIRR 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,653
Number of Sequences: 59808
Number of extensions: 303410
Number of successful extensions: 1147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)