Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1379
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AC084160-2|AAK39373.1|  376|Caenorhabditis elegans Hypothetical ...    29   2.1  
AC024743-1|AAK68402.2|  177|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    28   6.3  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    28   6.3  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    28   6.3  

>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +1

Query: 58  LYANETSVSDSKLEDDLYNSILVADYDHSVEK--SKQIYE-DKKSEVITNVVNKLIRNNK 228
           +YA   S  D  LE DL+N   + +Y+H + K   +++++  KK E   NV+N+ I    
Sbjct: 318 MYAQSDSSLDHLLEWDLFNFEQLTEYEHLMMKLYKQEVFDIVKKYEKKRNVLNREIHRRD 377

Query: 229 MN 234
           ++
Sbjct: 378 VS 379


>Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical
           protein F08G12.1 protein.
          Length = 635

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 49  VASLYANETSVSDSKLEDDLYNSILVADYDHSVE---KSKQIYEDKKSEV 189
           +  L  N++ +  S  E D Y     ADYD  +E   + ++ Y DKKSE+
Sbjct: 250 IRQLETNKSEIVSSYHELDCYQETPEADYDTFIELVNQKRREYADKKSEM 299


>AC084160-2|AAK39373.1|  376|Caenorhabditis elegans Hypothetical
           protein Y73B3B.1 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 70  ETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKS 183
           + ++SD K+  DL +SI     DHS+ KS +  EDK S
Sbjct: 276 DPAISDGKVVLDLIDSIKPNVIDHSLVKSGKSNEDKMS 313


>AC024743-1|AAK68402.2|  177|Caenorhabditis elegans Hypothetical
           protein Y104H12BR.1 protein.
          Length = 177

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 70  ETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKS 183
           + ++SD K+  DL ++I     DHS+ KS +  EDK S
Sbjct: 108 DPAISDGKVVLDLIDAIKPNVIDHSLVKSGKSNEDKMS 145


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 41  VFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLK 151
           V + R  +PT P+   P  +T  T AS L  T +P+K
Sbjct: 647 VSTQRAPVPTTPRPTAPAVQTTTTRASRLETTRVPVK 683


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 59  CMPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRT 175
           C+PT+  +P        TT  S P TT+P+   N  + T
Sbjct: 14  CIPTQFVTPLNPGTITTTTTISAPTTTVPITTTNPVSTT 52


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 599 LGLKSFDAVGPVGHVVNGSGLFELPTSNTDSLSVHNLEVDLVVLPQRNELPADFWTRLVL 420
           L L+ FD    V  ++     F+L    TD +S+H ++   VV     +LP D WT  V 
Sbjct: 185 LALQKFDHSN-VFQLIQELSTFDLAAMCTDQISIHVIQ--RVV----KQLPVDMWTFFVH 237

Query: 419 AIAVGKS 399
            ++ G S
Sbjct: 238 FLSSGDS 244


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 74  PQSPTPNSKTIFTTAS-SLPITTIPLKRANRSTRTR 178
           PQ P P  +T  T    +LP TT+P+   N++ RT+
Sbjct: 762 PQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTPRTK 797


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -1

Query: 626  VVLSGLQGPLGLKSFDAVGPVGHVVNGSGLFELPTSNTDSLSVHNLEVDLVVLPQRNELP 447
            V+L     P GL S DA+ P         L  L T   D L  H  E+ L   P++  +P
Sbjct: 1275 VILRSPNLPAGLLSTDAINPHTRSFKSGALLMLKTQLLDLL--HKFELALATQPRQLLIP 1332

Query: 446  A 444
            +
Sbjct: 1333 S 1333


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 599 LGLKSFDAVGPVGHVVNGSGLFELPTSNTDSLSVHNLEVDLVVLPQRNELPADFWTRLVL 420
           L L+ FD    V  ++     F+L    TD +S+H ++   VV     +LP D WT  V 
Sbjct: 185 LALQKFDHSN-VFQLIQELSTFDLAAMCTDQISIHVIQ--RVV----KQLPVDMWTFFVH 237

Query: 419 AIAVGKS 399
            ++ G S
Sbjct: 238 FLSSGDS 244


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -1

Query: 626  VVLSGLQGPLGLKSFDAVGPVGHVVNGSGLFELPTSNTDSLSVHNLEVDLVVLPQRNELP 447
            V+L     P GL S DA+ P         L  L T   D L  H  E+ L   P++  +P
Sbjct: 1273 VILRSPNLPAGLLSTDAINPHTRSFKSGALLMLKTQLLDLL--HKFELALATQPRQLLIP 1330

Query: 446  A 444
            +
Sbjct: 1331 S 1331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,930,974
Number of Sequences: 27780
Number of extensions: 224315
Number of successful extensions: 1159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)