Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1379
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 36 0.029
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 32 0.27
At3g27710.1 68416.m03460 zinc finger protein-related contains si... 31 0.63
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf... 30 1.1
At4g39510.1 68417.m05587 cytochrome P450 family protein contains... 30 1.4
At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3... 30 1.4
At1g23540.1 68414.m02960 protein kinase family protein contains ... 29 3.3
At5g29070.1 68418.m03617 expressed protein 28 4.4
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3... 28 5.8
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3... 28 5.8
At4g13040.1 68417.m02035 AP2 domain-containing transcription fac... 28 5.8
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 27 7.7
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 27 7.7
At5g47730.1 68418.m05897 SEC14 cytosolic factor, putative / poly... 27 7.7
At4g00620.1 68417.m00086 tetrahydrofolate dehydrogenase/cyclohyd... 27 7.7
At3g13540.1 68416.m01702 myb family transcription factor contain... 27 7.7
At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3... 27 7.7
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 35.5 bits (78), Expect = 0.029
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 4 DAQKMKT-VQVILCLFVASLYANETSVSDSKLEDDLYNSI--LVADYDHSVEKSKQIYED 174
D ++KT VQ I C+ A+ET++ SK DDL I L+ D + +E +Q+ E+
Sbjct: 711 DQMEVKTMVQAIACVSQREAEAHETAIKLSKENDDLRQKIKVLIEDNNKLIELYEQVAEE 770
Query: 175 KKSEVITNVVNKLIRNN 225
S + NN
Sbjct: 771 NSSRAWGKIETDSSSNN 787
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 KMKTVQVILCLFVASLYANETSVSDSKL-EDDLYNSILVADYDHSVEKSKQIYEDKKSEV 189
K KT Q +LC+ +++ S + +++ D++ + I+ DYD V+ S I ++ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457
Query: 190 ITNVVN 207
+TN V+
Sbjct: 458 LTNGVD 463
>At3g27710.1 68416.m03460 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 537
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 61 YANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 240
Y + + KLED L SIL +S K ++++ K+ +T+ VN+L + ++
Sbjct: 353 YRYKAHIDSLKLEDKLRKSILEKAVSNSETKDQKVF--KEYSWVTDAVNRLFISRRILSQ 410
Query: 241 EYAYHY 258
Y + +
Sbjct: 411 SYPFAF 416
>At3g27720.1 68416.m03461 zinc finger protein-related contains
Pfam:PF01485 IBR domain
Length = 493
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +1
Query: 61 YANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 240
Y + + KLED L SIL +S K ++++ K+ I + VN+L R+ ++ +
Sbjct: 313 YRYKAHIDSLKLEDKLKKSILKKAVLNSETKDQKVF--KEYSWIIDAVNRLFRSRRI--L 368
Query: 241 EYAYHY 258
Y+Y +
Sbjct: 369 SYSYPF 374
>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
Pfam PF00067: Cytochrome P450; similar to Cytochrome
P450 86A2 (SP:O23066) [Arabidopsis thaliana]
Length = 508
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 327 NNIKLMYKRDGLALTLDDENSNDGRLAYG-DGKDKTSPKVSWKFVPLWENNKVYFKI 494
++IKL + L DD+ D LA+ G+D TS +SW F L EN +V KI
Sbjct: 281 SHIKLDTTKYELLNPSDDKFLRDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKI 337
>At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3.1)
(GLR2) identical to putative glutamate receptor GLR2
[Arabidopsis thaliana] gi|4185740|gb|AAD09174; plant
glutamate receptor family, PMID:11379626
Length = 951
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 354 DGLALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 458
D +AL DD+NS +G A GD ++ K+S+K V
Sbjct: 194 DVVALYNDDDNSRNGVTALGDELEERRCKISYKAV 228
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 538 NPEPLTTWPTGPTASKDLRPNGPCSPLST 624
NP P+ P+GP S PN P SP T
Sbjct: 176 NPPPIQ--PSGPATSPPANPNAPPSPFPT 202
>At5g29070.1 68418.m03617 expressed protein
Length = 307
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +1
Query: 526 GSSNNPEPLTTW--PTGPTASKDLRPNGPCS 612
GS P P T TGP +S RP G CS
Sbjct: 106 GSDTQPRPWATQGATTGPESSPTCRPTGSCS 136
>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 360 LALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 458
+AL DD+NS +G A GD + K+S+K V
Sbjct: 166 IALYNDDDNSRNGITALGDELEGRRCKISYKAV 198
>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 360 LALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 458
+AL DD+NS +G A GD + K+S+K V
Sbjct: 166 IALYNDDDNSRNGITALGDELEGRRCKISYKAV 198
>At4g13040.1 68417.m02035 AP2 domain-containing transcription factor
family protein contains Pfam profile PF00847: AP2 domain
Length = 226
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +2
Query: 83 PTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSY 217
P PN++ + + +TT+ +++ R+RR +S M + Y
Sbjct: 36 PNPNARAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDY 80
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +2
Query: 71 KPQSPTPNSKTIFTTASSLPITTI------PLKRANRSTRTRRAKSSQ 196
K +SP P+S T T A+S P +TI PL + R RT+R + +Q
Sbjct: 21 KVKSPPPSSSTTTTRATS-PSSTISESSNSPLAISTRKPRTQRKRPNQ 67
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +2
Query: 71 KPQSPTPNSKTIFTTASSLPITTI------PLKRANRSTRTRRAKSSQ 196
K +SP P+S T T A+S P +TI PL + R RT+R + +Q
Sbjct: 21 KVKSPPPSSSTTTTRATS-PSSTISESSNSPLAISTRKPRTQRKRPNQ 67
>At5g47730.1 68418.m05897 SEC14 cytosolic factor, putative /
polyphosphoinositide-binding protein, putative similar
to polyphosphoinositide binding protein SEC14 homolog
Ssh1p (GI:2739044) {Glycine max}
Length = 341
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 324 ENNIKLMYKRDGLALTLDDENSNDGRLAYGD 416
E+ + R+GLA+++DD S+ LA GD
Sbjct: 310 ESELHKFENRNGLAVSIDDRKSSHETLANGD 340
>At4g00620.1 68417.m00086 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
(C1-THF synthase) [Includes: Methylenetetrahydrofolate
dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
contains Pfam profiles PF02882: Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
catalytic domain
Length = 360
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Frame = -1
Query: 419 AIAVGKSAIV---AVLIVQRQSETVALVH 342
A+ +G+S IV A L++QR+ TV+++H
Sbjct: 230 AVVIGRSNIVGMPAALLLQREDATVSIIH 258
>At3g13540.1 68416.m01702 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 249
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 49 VASLYANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVN 207
++S + ++T+V+ + D NSI V +H E Y+DK S + +++N
Sbjct: 163 ISSSHTDDTTVNGG--DGDSKNSINVFGGEHGYEDFGFCYDDKFSSFLNSLIN 213
>At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3.5)
plant glutamate receptor family, PMID:11379626
Length = 895
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 351 RDGLALTLDDENSNDGRLAYGDGKDKTSPKVSWK--FVPLWENNKV 482
R+ +A+ +DDE +G GD K K+S+K F P +N+ +
Sbjct: 123 REVVAIFVDDEYGRNGISVLGDALAKKRAKISYKAAFPPGADNSSI 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,256,592
Number of Sequences: 28952
Number of extensions: 209299
Number of successful extensions: 881
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -