Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1377
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30662-10|CAI58651.1|  409|Caenorhabditis elegans Hypothetical p...    28   8.0  
Z30662-9|CAA83138.2|  451|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z30662-10|CAI58651.1|  409|Caenorhabditis elegans Hypothetical
           protein T16H12.5b protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
 Frame = +1

Query: 229 PWPPSCCHDDQRL----SWCPMSVF*AP*HYVWFIPQRQFCLPKLAHLAPSS 372
           P P S  H D  L    +WC   V     +Y+W I    FC  ++  +  SS
Sbjct: 26  PSPSSASHGDPLLPVAENWCHTQVKVVKFNYMWTINNFSFCREEMGEVLKSS 77


>Z30662-9|CAA83138.2|  451|Caenorhabditis elegans Hypothetical
           protein T16H12.5a protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
 Frame = +1

Query: 229 PWPPSCCHDDQRL----SWCPMSVF*AP*HYVWFIPQRQFCLPKLAHLAPSS 372
           P P S  H D  L    +WC   V     +Y+W I    FC  ++  +  SS
Sbjct: 68  PSPSSASHGDPLLPVAENWCHTQVKVVKFNYMWTINNFSFCREEMGEVLKSS 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,053
Number of Sequences: 27780
Number of extensions: 407806
Number of successful extensions: 860
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)