Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1376
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0407 - 18654134-18654172,18654913-18655803                       31   0.66 
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.87 
06_01_0350 + 2534422-2535615                                           31   1.2  
05_06_0098 + 25560158-25560925                                         30   2.0  
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   2.7  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    29   3.5  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   4.7  
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443...    29   4.7  
11_05_0087 + 18970741-18972702                                         28   6.2  
07_03_0078 - 13147741-13148913                                         28   6.2  
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628     28   8.1  
03_05_0565 + 25667391-25667696                                         28   8.1  

>12_02_0407 - 18654134-18654172,18654913-18655803
          Length = 309

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 15  EPGSGTVSIIVPSTLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 179
           E G+G ++++ PST +T      P+ P     R     + CLS    ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -1

Query: 463 TNIDQTRH------RXHPLPVQTRHAPVLRANP 383
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 158 PWNSNAQAEKKTLPGPLGGVFRP 90
           PW S+A+ E+K LP PL  +F P
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLP 64


>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = -1

Query: 442 HRXHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 263
           HR  P P  +   P L  +P + V   I   P PT F + +      ++++   +  T P
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90

Query: 262 RTSSP 248
               P
Sbjct: 91  SQRPP 95


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 433 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 344
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -1

Query: 256 SSPEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 83
           S  E SR++  + I+  P M  S   +  +   GFHG   L+   KL PDL +    HF 
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231

Query: 82  LPRRTLVFKVEGTI 41
                LVF   G I
Sbjct: 232 PATNQLVFPGRGAI 245


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 427 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 314
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>01_07_0257 -
           42343493-42343528,42344215-42344271,42344272-42344316,
           42344374-42344518,42344606-42344733,42344939-42345044,
           42345113-42345189,42345264-42345361,42345945-42346058,
           42346154-42346294,42346418-42346502,42346721-42346849
          Length = 386

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 303 TCCGYGYEPARHLHVHPHLNFQGP 232
           +CCG+     R+  + PHLN  GP
Sbjct: 135 SCCGFEEVLERYRQIVPHLNLSGP 158


>11_05_0087 + 18970741-18972702
          Length = 653

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 144 VRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEDVR 263
           VR P  P+ GR+G  RE  R    +    +   + G+ VR
Sbjct: 56  VRAPRRPLHGRHGHHREHRRGADELEPAGSPRHHRGQSVR 95


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 569 SGPAFSGLPRIFLAVSRVGFVSCAI 643
           SGP + G  R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247


>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
          Length = 132

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 319 ALHLGDLLRIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEP 179
           A H G    I VRT   +  TS       A SI TP  + CS+ + P
Sbjct: 38  ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84


>03_05_0565 + 25667391-25667696
          Length = 101

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 295 RIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGT 149
           RI++   A  PR  SP  +R A++         S+ +EP  P    HGT
Sbjct: 40  RIFMADAAHPPRHRSPPLARRADAASPRRSCSGSASAEPQAPVEEPHGT 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,585,899
Number of Sequences: 37544
Number of extensions: 461609
Number of successful extensions: 1627
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)