Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1376
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76965.1 68414.m08961 glycine-rich protein 30 1.3
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 29 3.9
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 3.9
At5g42370.1 68418.m05159 expressed protein 29 3.9
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 29 3.9
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 29 3.9
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 5.1
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 28 6.8
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 27 9.0
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 27 9.0
At5g22390.1 68418.m02612 expressed protein 27 9.0
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 27 9.0
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 447 PGTGXIRFPSKPDTPRSSEPILIPKLRIQFAD 352
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = -1
Query: 235 SAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFK 56
S S PP R SS + S F T+++ Q++ FP + AA HF T + K
Sbjct: 10 SMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHFN-KDGTAIKK 66
Query: 55 VEGTIIETVPLPGSGIG 5
++ + + L G +G
Sbjct: 67 LQAGVNKLADLVGVTLG 83
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 234 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 100
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 173 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 63
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 456 STRPGTGXIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 337
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 456 STRPGTGXIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 337
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 229 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 131
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 210 GGVRILSADLENSGEDVRGDVAPVRTH 290
GG+++ S + ++S +R DV+P RTH
Sbjct: 12 GGLKVESGEQKSSWPTMRFDVSPYRTH 38
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 487 NSLKRT*RTNIDQTRHRXHPLPVQTRHAPVLRANPYSEVTDP 362
N K T TN T R +P P Q + P + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 487 NSLKRT*RTNIDQTRHRXHPLPVQTRHAPVLRANPYSEVTDP 362
N K T TN T R +P P Q + P + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 108 ERSGKSFLFCLSVRVPWNPIEG 173
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 36 SIIVPSTLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 167
S++ +L TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,319
Number of Sequences: 28952
Number of extensions: 344536
Number of successful extensions: 1043
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -