Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1373
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    29   0.44 
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    29   0.59 
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.4  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   7.2  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   7.2  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 647 YICQRITQVS*GQL--SEDRNLVWSKRAKAGLIQMFSTHRDCESTAY 513
           Y+C  +  +S G L  SED +++W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 360 RWIVHPSKGNVSWG*TVVRQVSFTLLMACRCDSNTVSTRGTAVSDIWFMHS 208
           R+ V PSKG + +G     +      +A  C +N +S +G  +  +WF  S
Sbjct: 525 RFGVTPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGES 575


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 418 NVAMNAWLPQASYPCGNFSGTFLLKTLYTK 507
           N+  N W   A Y   ++SGT  LKT +T+
Sbjct: 422 NIFCNIWSDNADYISLSYSGTGALKTDFTR 451


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 530  SPYAY*TSGSSQLLPFCSTRGF 595
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 199 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 74
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,390
Number of Sequences: 5004
Number of extensions: 54913
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)