Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1373
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.1  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   2.4  
03_05_0183 - 21681673-21682524                                         29   3.2  
09_01_0097 - 1450544-1452058                                           29   4.3  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   9.9  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    27   9.9  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 142 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 8
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 229 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 131
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 440 SQAFIATLLFDPSMSALPIIAKQNSPS 360
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>09_01_0097 - 1450544-1452058
          Length = 504

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 575 RAKAGLIQMFSTHRDCESTAYRSLV*RVFSKKVPEKL 465
           RA  GLI++  + R   S AYR+L+    S+  P+ L
Sbjct: 81  RAVGGLIELLDSMRTASSAAYRALLLTESSRSRPDSL 117


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 130 RLGWLRP*RRSGIIP 174
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 123 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 19
           AR C  W PESR  ++ V  ++A    ++R+   A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,584,123
Number of Sequences: 37544
Number of extensions: 399955
Number of successful extensions: 1096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)