Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1373
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 71 5e-12
AL356489-1|CAC88180.1| 130|Homo sapiens T cell receptor beta va... 31 4.7
DQ438889-1|ABE66441.1| 244|Homo sapiens GLIS family zinc finger... 30 6.3
DQ438888-1|ABE66440.1| 244|Homo sapiens GLIS family zinc finger... 30 6.3
DQ438887-1|ABE66439.1| 244|Homo sapiens GLIS family zinc finger... 30 6.3
DQ438886-1|ABE66438.1| 244|Homo sapiens GLIS family zinc finger... 30 6.3
DQ438877-1|ABE66434.1| 930|Homo sapiens GLIS family zinc finger... 30 6.3
BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein. 30 6.3
AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type ... 30 6.3
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 70.5 bits (165), Expect = 5e-12
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 382 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSGTFLLK 492
MIGRADIEGSKS+VAMNAW PQASYPCGNFS T LK
Sbjct: 1 MIGRADIEGSKSDVAMNAWPPQASYPCGNFSDTSCLK 37
>AL356489-1|CAC88180.1| 130|Homo sapiens T cell receptor beta
variable 25/OR9-2 protein.
Length = 130
Score = 30.7 bits (66), Expect = 4.7
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 220 PNVRNCGSSRTDSITIATT-SHQ*GKTNLSHDGLTPAHVPF*WVNNPTLGEFCF-AMIGR 393
P R G+ + ++ + T H + S +G+TP H PF WVN+ G+ C + + R
Sbjct: 31 PRHRVIGAGKKITLECSQTMGHDKMYWSRSRNGITP-HPPFLWVNSTEKGDLCSESTVSR 89
Query: 394 ADIE 405
IE
Sbjct: 90 IRIE 93
>DQ438889-1|ABE66441.1| 244|Homo sapiens GLIS family zinc finger 3
transcript variant TS5 protein.
Length = 244
Score = 30.3 bits (65), Expect = 6.3
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 172 PRMVASHHRPLGRVHE--PNVRNCGSSRTDSITIATTSHQ*GKTNLSHDGLTP 324
PRMV+ HH P R H P CGS T S T+A+ ++ S G+ P
Sbjct: 20 PRMVSGHHIPAIRAHSGTPGPSPCGS--TSSPTMASLANNLHLKMPSGGGMAP 70
>DQ438888-1|ABE66440.1| 244|Homo sapiens GLIS family zinc finger 3
transcript variant TS4 protein.
Length = 244
Score = 30.3 bits (65), Expect = 6.3
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 172 PRMVASHHRPLGRVHE--PNVRNCGSSRTDSITIATTSHQ*GKTNLSHDGLTP 324
PRMV+ HH P R H P CGS T S T+A+ ++ S G+ P
Sbjct: 20 PRMVSGHHIPAIRAHSGTPGPSPCGS--TSSPTMASLANNLHLKMPSGGGMAP 70
>DQ438887-1|ABE66439.1| 244|Homo sapiens GLIS family zinc finger 3
transcript variant TS3 protein.
Length = 244
Score = 30.3 bits (65), Expect = 6.3
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 172 PRMVASHHRPLGRVHE--PNVRNCGSSRTDSITIATTSHQ*GKTNLSHDGLTP 324
PRMV+ HH P R H P CGS T S T+A+ ++ S G+ P
Sbjct: 20 PRMVSGHHIPAIRAHSGTPGPSPCGS--TSSPTMASLANNLHLKMPSGGGMAP 70
>DQ438886-1|ABE66438.1| 244|Homo sapiens GLIS family zinc finger 3
transcript variant TS2 protein.
Length = 244
Score = 30.3 bits (65), Expect = 6.3
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 172 PRMVASHHRPLGRVHE--PNVRNCGSSRTDSITIATTSHQ*GKTNLSHDGLTP 324
PRMV+ HH P R H P CGS T S T+A+ ++ S G+ P
Sbjct: 20 PRMVSGHHIPAIRAHSGTPGPSPCGS--TSSPTMASLANNLHLKMPSGGGMAP 70
>DQ438877-1|ABE66434.1| 930|Homo sapiens GLIS family zinc finger 3
transcript variant long T1 protein.
Length = 930
Score = 30.3 bits (65), Expect = 6.3
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 172 PRMVASHHRPLGRVHE--PNVRNCGSSRTDSITIATTSHQ*GKTNLSHDGLTP 324
PRMV+ HH P R H P CGS T S T+A+ ++ S G+ P
Sbjct: 20 PRMVSGHHIPAIRAHSGTPGPSPCGS--TSSPTMASLANNLHLKMPSGGGMAP 70
>BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein.
Length = 322
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 159 TPLRPKPA*PNPARICSLWSPESRE 85
TP P P P PA +CS SPE R+
Sbjct: 68 TPTPPTPVLPGPASLCSPASPELRQ 92
>AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type
containing 12 protein.
Length = 210
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 159 TPLRPKPA*PNPARICSLWSPESRE 85
TP P P P PA +CS SPE R+
Sbjct: 68 TPTPPTPVLPGPASLCSPASPELRQ 92
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,962,473
Number of Sequences: 237096
Number of extensions: 2195934
Number of successful extensions: 7792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7792
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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