Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1373
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical
           protein ZK1225.2 protein.
          Length = 478

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 535 GTAKARPIDL*YKEFLARRCQKSYHRDNWLVAA 437
           GTA AR + + Y EF+ ++ Q +YH  NW   A
Sbjct: 134 GTAFARVVYVEY-EFIEKQVQAAYHYQNWFCFA 165


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 232 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 53
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 52  SH--SKRETRRRSP 17
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,134,146
Number of Sequences: 27780
Number of extensions: 313756
Number of successful extensions: 757
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)