Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1373
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.67 
At4g29310.1 68417.m04190 expressed protein                             29   3.6  
At3g29600.1 68416.m03720 hypothetical protein                          28   4.7  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    28   6.2  
At1g75540.1 68414.m08779 zinc finger (B-box type) family protein...    28   6.2  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 452 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 345
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 400 IEGSKSNVAMNAWLPQASYPCGNFSGTFLLKTLYTKDR*AVLSQSLCVLNIWIK 561
           I G K ++ ++ +  +  + CG  SG  L K     D  A LS+++   N W K
Sbjct: 85  ISGKKISLRVSVYAGRTGHTCGVASGKLLGKVEVAVDLAAALSRTVAFHNGWKK 138


>At3g29600.1 68416.m03720 hypothetical protein
          Length = 164

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 199 PLGRVHEPNVRNCGSSRTDSIT--IATTSHQ*GKTNLSHDGL 318
           PL     P+  + GS RTD  +  I  +SH+ G+T+ S DG+
Sbjct: 9   PLVGSDRPDRSSDGSDRTDQSSNGIGRSSHETGRTDRSSDGM 50


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 575 RAKAGLIQMFSTHRDCESTAYRSL 504
           RAK  L+Q+  TH+  E T+Y+S+
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSI 314


>At1g75540.1 68414.m08779 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33202 GI:3618312
           from [Oryza sativa]
          Length = 331

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 555 DQASFCPFAPHEVSVLAELALGHLRYSL 638
           D+AS C    H+V    +LA  HLR+SL
Sbjct: 20  DEASLCGGCDHQVHHANKLASKHLRFSL 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,493,275
Number of Sequences: 28952
Number of extensions: 301856
Number of successful extensions: 747
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)