Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1372
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.5  
At2g17550.1 68415.m02031 expressed protein                             28   6.0  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   8.0  
At2g34900.2 68415.m04284 DNA-binding bromodomain-containing prot...    28   8.0  
At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot...    28   8.0  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   8.0  

>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 699 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 586
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At2g17550.1 68415.m02031 expressed protein
          Length = 765

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +3

Query: 51  RSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 230
           R+ D   +  T  + + D N LRR+++  E E ++      EP     + V +  PD   
Sbjct: 527 RNVDYLSQVSTPDVTVSDENELRRQINELESEVQVRTPVEEEPIQEIETIVDLGNPDKVF 586

Query: 231 LASALEAFGI 260
           +   L A G+
Sbjct: 587 VRDLLVASGL 596


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 312 PNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSNPAHVP 428
           P+ R+  + R      RN KP V  N PVSR   PA VP
Sbjct: 829 PSRRSLSTDRASTIKSRN-KPDVTQNLPVSRTPFPARVP 866


>At2g34900.2 68415.m04284 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 276

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 780 SGSRTLQAGSLTGAVHLSKNNAVS*GQLSEDRNLAWSKRAK 658
           SG    Q  + TG   ++KNNA    ++S+  N A  KRAK
Sbjct: 234 SGGTNAQNNNNTGTGEINKNNAKRRREISDAINKASIKRAK 274


>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 386

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 780 SGSRTLQAGSLTGAVHLSKNNAVS*GQLSEDRNLAWSKRAK 658
           SG    Q  + TG   ++KNNA    ++S+  N A  KRAK
Sbjct: 344 SGGTNAQNNNNTGTGEINKNNAKRRREISDAINKASIKRAK 384


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 292 GRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRESGGSKQCD 161
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,774,109
Number of Sequences: 28952
Number of extensions: 379286
Number of successful extensions: 993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)