Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1370
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.8  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   2.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   2.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 489 KVSQQGLRLRKLVKNAYCILLP*RSFQLGCYLCISSF 379
           +++ + + L  L   A+C + P R+ ++G Y  I +F
Sbjct: 542 ELNLKNIDLTVLESGAFCKMQPLRTLKIGVYRNIKNF 578


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 40  NHLCDILGQNYVFIYYESYFEYL 108
           +H C  +  N  F  Y+SY  Y+
Sbjct: 113 SHYCLFVASNCFFWSYQSYMSYI 135


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 40  NHLCDILGQNYVFIYYESYFEYL 108
           +H C  +  N  F  Y+SY  Y+
Sbjct: 113 SHYCLFVASNCFFWSYQSYMSYI 135


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 256 PKNYLNKYFFS 224
           P+NY+N Y FS
Sbjct: 39  PQNYINSYLFS 49



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 366 SRLCCRVCTASTRRCKFEISYAYKYIIVFNI 274
           ++ CC    +S +R KFE S   + I V NI
Sbjct: 188 NKCCCLRTCSSAKRPKFENSSCDEDIDVTNI 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,212
Number of Sequences: 336
Number of extensions: 3305
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)