Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1370
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924...    30   1.5  

>01_05_0346 +
           21191542-21191783,21191988-21192072,21192159-21192422,
           21192518-21192820,21193695-21193799,21193916-21194020,
           21194613-21194712,21195614-21195933,21196183-21196359,
           21196432-21196560,21196592-21196636,21196851-21197078
          Length = 700

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 85  YESYFEYLNSAKTPISISQYFTLLRVNL*KSLVSVC 192
           Y SYF+YL  ++ P    Q +  +R N  +  VSVC
Sbjct: 125 YSSYFKYLGLSRNPARALQVYGAIRENPTRIHVSVC 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,182
Number of Sequences: 37544
Number of extensions: 243540
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)