Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1370
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear recep...    28   7.3  
AY204205-1|AAO39206.1|  141|Caenorhabditis elegans nuclear recep...    28   7.3  
AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear horm...    28   7.3  
AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear horm...    28   7.3  

>AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -3

Query: 402 CYLCIS-SF*YSYSRLCCRVCTASTRRCKFEIS 307
           C +C      Y +    CR C A  RRC F ++
Sbjct: 34  CQICYQPGHGYHFGAFICRACAAFFRRCHFSLA 66


>AY204205-1|AAO39206.1|  141|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 141

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -3

Query: 402 CYLCIS-SF*YSYSRLCCRVCTASTRRCKFEIS 307
           C +C      Y +    CR C A  RRC F ++
Sbjct: 34  CQICYQPGHGYHFGAFICRACAAFFRRCHFSLA 66


>AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical
           protein F56F11.5 protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 214 YTMC*KNICLNNFSEVVLLDYVENY 288
           +T+C K + L +++E  ++  +ENY
Sbjct: 22  FTLCTKEVALRDYAETFIIKIIENY 46


>AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform b protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -3

Query: 402 CYLCIS-SF*YSYSRLCCRVCTASTRRCKFEIS 307
           C +C      Y +    CR C A  RRC F ++
Sbjct: 34  CQICYQPGHGYHFGAFICRACAAFFRRCHFSLA 66


>AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform a protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -3

Query: 402 CYLCIS-SF*YSYSRLCCRVCTASTRRCKFEIS 307
           C +C      Y +    CR C A  RRC F ++
Sbjct: 34  CQICYQPGHGYHFGAFICRACAAFFRRCHFSLA 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,231
Number of Sequences: 27780
Number of extensions: 268584
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)