Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1370
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62960.1 68418.m07899 expressed protein                             29   3.9  
At5g58100.1 68418.m07270 expressed protein                             28   5.1  
At3g27770.1 68416.m03465 expressed protein                             27   8.9  
At1g73130.1 68414.m08456 expressed protein                             27   8.9  

>At5g62960.1 68418.m07899 expressed protein
          Length = 347

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 35  FKITYVTFW--AKIMFSYIMKVILNT*TQQKLPYPYLNISLYYASIF 169
           F+I Y  FW  A ++F + +  +++       PYP+L++S +YA ++
Sbjct: 267 FRIAYFFFWTIAYVIFQWALHSLVHI----WWPYPFLDLSSHYAPLW 309


>At5g58100.1 68418.m07270 expressed protein 
          Length = 945

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +3

Query: 354 SINANTNIKNY*YTSNSLVGNYVKVTKCNRHFLPISVNVIPAG 482
           S+++N+ + NY  T +  + +Y+++ + +  +LP+ VN I  G
Sbjct: 72  SVHSNSGVLNY--TKSGNIASYLELMEVDSVYLPVPVNFIFIG 112


>At3g27770.1 68416.m03465 expressed protein
          Length = 315

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 35  FKITYVTFWAK--IMFSYIMKVILNT*TQQKLPYPYLNISLYYASIF 169
           F+ +Y   W    ++F +I+ + ++       PYP+LN+SL  A ++
Sbjct: 246 FRFSYFILWTGCFVLFQWILHMFISV----GWPYPFLNLSLDMAPVW 288


>At1g73130.1 68414.m08456 expressed protein
          Length = 646

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 290 IYLYA*EISNLQRRVLAVQTRQHKREYEYQKLLI 391
           I+L   ++ + +R+VL V T + +RE EY++L I
Sbjct: 572 IHLRTKKLRSFKRKVLDVLTSKRRREKEYEQLPI 605


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,736
Number of Sequences: 28952
Number of extensions: 226387
Number of successful extensions: 332
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)