Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1367
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    28   1.0  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   3.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   7.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   9.7  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   9.7  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   9.7  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   9.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.7  

>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +3

Query: 396 MGEQSNAWRILLRNDRKSRHRRIKKQRRYERLAATSQFPCGNFSGTSC*KLFILKDR*AV 575
           +GE ++ W  +L     S    + K +R   LAA    P  N   ++     +  DR  V
Sbjct: 401 VGENNDFWNRMLHRSHLSTMAALHKSQRSHDLAANEHAPILNPKNSALNPRLVTNDRVKV 460

Query: 576 LSQSL 590
            S SL
Sbjct: 461 KSPSL 465


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -3

Query: 262 RPRAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 128
           + +A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 86  KAKAAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 583  SPYAY*TSGSSQLLPFCSTRGF 648
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -3

Query: 124 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 2
           DF+SR         + + RRR P  SRR +       RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = +3

Query: 393 LMGEQSNAWRILLRNDRKSRHRR--IKKQRRYERLAATSQFPCGNFSGTSC*KLFILKDR 566
           L   +S+    L  N    R+    +K  RRY  +  +   PC       C + F   DR
Sbjct: 183 LSERESHVANCLSNNSSSPRNMTEFLKHARRYISMQLSETSPCLGQECIICFEEFAAGDR 242

Query: 567 *AVLSQSLCVLNI 605
            A +   LC+ ++
Sbjct: 243 VARIEYCLCIFHL 255


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 527 WHLLLKTLYTKGSIGRAFAVPMRTEH 604
           +H + + L   GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 273 PNVRNCGSSRTEQYYYRNDKPSVG 344
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 519  NFSGTSC*KLFILKDR*AVLSQSL 590
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,395
Number of Sequences: 5004
Number of extensions: 56876
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)