Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1367
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287...    35   0.066
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.1  
06_01_0655 + 4742267-4742531,4743313-4744136                           30   1.9  
07_03_0846 - 21983581-21986055                                         29   2.5  
03_05_0183 - 21681673-21682524                                         29   3.3  
09_04_0235 + 15904891-15905218,15906732-15907594                       28   5.7  
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    28   7.6  

>09_04_0593 -
           18825741-18826702,18826994-18827875,18828687-18828775,
           18828942-18829080,18829405-18829531,18829629-18829838
          Length = 802

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
 Frame = -3

Query: 304 VREEPQFRTF-GSCTRPRAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 128
           +++EP+FR F GS  R     +K  +AG+  N + A +++++S K  +  E   SG    
Sbjct: 691 IKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNK-KVNQETAASG---- 745

Query: 127 CDFTSRVSHSKRETRRRSPFGSRRSMLS 44
                 VS+S R+ + +  FGS +S  S
Sbjct: 746 ------VSNSTRQKKGKLVFGSNKSSSS 767


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 196 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 62
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>06_01_0655 + 4742267-4742531,4743313-4744136
          Length = 362

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
 Frame = +3

Query: 54  DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 230
           ++RDP  G+R  +  F       +++  E    RG    ++ PD A +AS     R +  
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVASQ----RSHAE 184

Query: 231 DGSFAPPALGRVHEPNVRNCGSS---RTEQYYY 320
             S   PA     +P V + G+     T  Y Y
Sbjct: 185 PSSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 54  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 203
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 494 SQAFIATLLFDPSMSALPIIAKQNSPS 414
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>09_04_0235 + 15904891-15905218,15906732-15907594
          Length = 396

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 54  DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 230
           ++RDP+ G+R  +  +       +++  E    RG    ++ PD   +A  L   ++   
Sbjct: 150 EIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAK 209

Query: 231 DGSFAPP 251
               APP
Sbjct: 210 QEKLAPP 216


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 205 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 32
           K+ AS A  G D     P R  GG K+    S  + SKR  + R + F     +L    L
Sbjct: 4   KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63

Query: 31  TRASR 17
           TRA+R
Sbjct: 64  TRAAR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,213,812
Number of Sequences: 37544
Number of extensions: 419403
Number of successful extensions: 1134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)