Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1367
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14740.1 68414.m01762 expressed protein                             32   0.39 
At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.68 
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    30   1.6  
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family...    29   2.7  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.6  
At5g42710.1 68418.m05202 hypothetical protein                          28   6.3  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   8.4  

>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -3

Query: 313 YCSVREEPQFRTFGSCTRPRAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGS 134
           + +VR       F S + PR+G  +L  + LC N+ K   SL + GK+++T     S   
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN-ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDD 104

Query: 133 K--QCDFTSRVSHSKRETRRRS 74
           K  + DF +    +   ++R++
Sbjct: 105 KWVERDFFNLREMNPNSSKRKA 126


>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 506 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 399
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
            transcription factor (HUA2) - Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1445

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 126  HCLEPPDSR-GSTVSISLPDSARLASALEAFRHNPADGSFAPPA 254
            HCL PP +      SI+LP S+    ++ +    P    FAPPA
Sbjct: 1162 HCLPPPTAPLAPAQSIALPPSSITRPSMPSHPSLPLQPGFAPPA 1205


>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 217

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +3

Query: 138 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPALGRVHEPNVRNCGSSRTEQYY 317
           PP    ST   + P  +  +S     R  P    FAPP   ++  P+  +   S +   Y
Sbjct: 46  PPLKLKSTPPSNSPSPSSSSSFFSESRSRPVS-PFAPPPSFKLKSPSDSDSNCSASPTPY 104

Query: 318 YRNDKPSVG 344
           +R+  P  G
Sbjct: 105 FRSSSPRAG 113


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 628 RAKAGLIQMFSTHRDCESTAYRSFSIK 548
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At5g42710.1 68418.m05202 hypothetical protein 
          Length = 807

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 141 PDSRGSTVSISLPDSARLASALE-AFRHNPADGSFAPPALGRVHEPNVRNCGSSRTEQYY 317
           P  +G ++   L  S  LA ALE A +    D S +   +  +HE   R+ G +R+ Q +
Sbjct: 75  PYGKGKSME-KLDLSKALAFALENAGKATRVDPSGSASIISFLHEVGRRSLGETRSSQVF 133

Query: 318 YRNDKPS 338
            +  +PS
Sbjct: 134 VQQQQPS 140


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 204 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 64
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,885
Number of Sequences: 28952
Number of extensions: 316598
Number of successful extensions: 817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)