Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1365
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.6  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.6  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 274 LNYYDSITRVPAEICPERNNIGCYLICKVLIDNSNMPISYI 152
           +N   +I R+  E+C  + N  C LI K L DN +  I  I
Sbjct: 23  INSKKTIMRILKEVCVLQANRACILI-KDLFDNVHNHIQNI 62


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 274 LNYYDSITRVPAEICPERNNIGCYLICKVLIDNSNMPISYI 152
           +N   +I R+  E+C  + N  C LI K L DN +  I  I
Sbjct: 6   INSKKTIMRILKEVCVLQANRACILI-KDLFDNVHNHIQNI 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,522
Number of Sequences: 438
Number of extensions: 3956
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)