Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1364
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    32   0.063
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    27   3.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   7.3  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 442 HLHPNNMTHLIRKSQRKVKIAVKNVLCKLERGLWDCDVMIF 564
           +L  NN T +   +QR +++AV+N+    ER   DC + +F
Sbjct: 427 YLARNNQTEIFEDNQRDLELAVENLSELCERPCQDCSLSVF 467


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 648 MALIYSWVFQDTTFSLFSSIMEYDSNAWENHHV 550
           M LI  WVF++  FSL  S + +D     NH V
Sbjct: 35  MKLIDQWVFEENEFSL--SFLAFDGPGALNHGV 65


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 636 YSWVFQDTTFSLFSSIMEYDSNAWENHHVAI 544
           + WV  D  ++L++ + + DS ++ NH + I
Sbjct: 103 FIWVEDDKQYALWACLAQLDSYSYPNHKLEI 133


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 42  RQTAHVHLASYPSST--NCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISG 215
           ++  +V +  YP       + GP G +  +++  SGA I I  KG+   G      ++ G
Sbjct: 187 QEKVYVPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRSDPSVRG 246

Query: 216 S 218
           +
Sbjct: 247 N 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,842
Number of Sequences: 5004
Number of extensions: 41359
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)