Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1364
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 49 4e-06
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 37 0.016
07_03_0490 + 18689911-18690028,18690030-18690265 31 0.81
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 29 3.3
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 29 3.3
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 7.5
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 28 7.5
10_08_0325 - 16752288-16752712,16755256-16757653 27 9.9
09_06_0094 - 20831530-20831997 27 9.9
09_04_0071 - 14313737-14315091,14316131-14316207,14316604-143167... 27 9.9
07_03_0496 - 18758767-18760113 27 9.9
07_01_0257 - 1925145-1926140 27 9.9
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = +3
Query: 54 HVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAIS 233
H+ ++ C+ G GG + E Q SGA IQ+S+ F PGT +RI+ +SG +
Sbjct: 60 HLRFLVSNTAAGCIIGKGGSTINEFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVI 119
Query: 234 NAHYLI 251
A LI
Sbjct: 120 KAMELI 125
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/53 (49%), Positives = 32/53 (60%)
Frame = +3
Query: 93 VPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
V G GR+ EI Q SGA I+IS +G F GT R VTI+G+ AI A +I
Sbjct: 299 VVGRAGRNITEIIQASGARIKISDRGDFIAGTSERKVTITGTSEAIQAAESMI 351
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V L SS + G GG + + S A I+IS + G +R+VT++G
Sbjct: 145 VRLVVPNSSCGGIIGKGGSTIKSFIEDSHAGIKISPQDNNFVGLHDRLVTVTGPLDHQMR 204
Query: 237 AHYLI 251
A YLI
Sbjct: 205 AIYLI 209
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
G G + +Q SGA IQ+++ PG++ R V +SG+ IS A LI
Sbjct: 180 GKSGETIKNLQLQSGAKIQVTRDLDALPGSQTRPVELSGTPDQISRAEQLI 230
>07_03_0490 + 18689911-18690028,18690030-18690265
Length = 117
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 1 LIAPPSPPCT---IMSIDKPLTCISPHTHLQLTASQGREGAAGWRYSRCPG 144
L PSPPCT ++ K + ++ T + L +G G G+R RC G
Sbjct: 11 LTGAPSPPCTHPVVVRGAKAILMVTSSTSMSLVLGRGASG-DGYRLMRCEG 60
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAP---GTRNRIVTISGSQTAISNAHYLI 251
CV G GG++ ++Q SGA I++ + P + ++ ISG+ +A+ A L+
Sbjct: 122 CVLGKGGKTVERMRQESGAQIRVFRNRDQLPPWAAPVDELIHISGNFSAVRKALLLV 178
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G G + +Q SGA IQI+K R V + G+ +I A LI+
Sbjct: 168 GKSGETIRNLQMNSGAKIQITKDAEADANAPTRSVELVGTLESIDKAERLIK 219
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +1
Query: 253 REDPGGGAEADQAQRHLD--PHAVTTLPRP---RPSAPR 354
RED GG A + LD P T LP P P+APR
Sbjct: 8 REDRGGSATPSERSMQLDRSPERATPLPSPDMTPPAAPR 46
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +3
Query: 6 RTTEPPVYHYVDRQTAHVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPG 185
RT PV D AH + ++ NC G + E++ S + IS+ F G
Sbjct: 185 RTPRVPVIFPADMNVAHAGIPETENAINCTKKASGATNNELECSSHGSPGISESAKFVQG 244
>10_08_0325 - 16752288-16752712,16755256-16757653
Length = 940
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 83 N*LRPRAGRAQLVGDTADVRGQHPDL 160
N +R R R +L GD +++ HPDL
Sbjct: 341 NLVRLRMARNKLAGDVSEILASHPDL 366
>09_06_0094 - 20831530-20831997
Length = 155
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 75 PSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
P+ PG R E+ + S + S APG R+V+ SG + S+ H+L+
Sbjct: 70 PAGAPWAPGASARLKNELWETSMPGARSSSLLLQAPGLTKRVVS-SGGMASASDPHHLL 127
>09_04_0071 -
14313737-14315091,14316131-14316207,14316604-14316725,
14316838-14316924,14317000-14317066,14317135-14317290,
14318689-14318837
Length = 670
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 169 PFFEIWMLAPDICCISNQLRPP 104
P F WM A + C I + RPP
Sbjct: 106 PIFRAWMTAINTCSIDDHQRPP 127
>07_03_0496 - 18758767-18760113
Length = 448
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 433 IYIHLHPNNMTHLIRKSQRKVKIAVKNVLCKLERGLWDCDVMIFPCVTVV 582
+ I HPN HL+ + +LC+ +G+W D P V VV
Sbjct: 145 VIIRSHPNGGGHLVAVMTNHWDCPL--ILCQPGKGIWTPDSCTMPFVRVV 192
>07_01_0257 - 1925145-1926140
Length = 331
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 1 LIAPPSPPCTIMSIDKPLTCISPHTHLQLTASQGREGAAGWRYSRCPG 144
L APP PCT + ++ L + P S A+G+ Y+ G
Sbjct: 59 LFAPPGAPCTAGARERALVTVDPPVPKAPPQSGSPAKASGFPYAGAAG 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,326,055
Number of Sequences: 37544
Number of extensions: 340373
Number of successful extensions: 1033
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -