Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1364
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)                        57   1e-08
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      31   1.1  
SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)               29   2.5  
SB_28437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 356

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/51 (50%), Positives = 33/51 (64%)
 Frame = +3

Query: 99  GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
           G GG++  E  Q SGA IQ+S+KG F PGT NR V I+G   A   AH+L+
Sbjct: 288 GKGGKTITEFMQYSGARIQVSQKGEFVPGTSNRKVVITGDVPAAQLAHFLV 338



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 99  GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISG 215
           G GG++  ++QQ +GA I++S    + PGT+ RI  I G
Sbjct: 28  GKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMG 66


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 93  VPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
           V G GG +   IQ  SGA +Q +      P + +R+ T+ GSQ  I     +I
Sbjct: 227 VIGKGGETIKRIQAESGARVQFN-PAKDNPNSSDRMATVQGSQEQIQKVEKII 278


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 78  SSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNR 197
           + T+ V G GGRS   I+  SGA IQI +   +  GT+ +
Sbjct: 405 AKTSRVIGEGGRSINSIRSQSGARIQIKEDKAYIRGTQEQ 444


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 13  PSPPCTIMSIDKPLTCISPHTHLQLTASQGREGAAGWRYSRCPG 144
           P+PP + + I KPL C  PHT  +  ++     ++ +  SR PG
Sbjct: 562 PTPPSSPVVIHKPLAC-PPHTRERRASNASPANSSEYDGSRSPG 604


>SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)
          Length = 491

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +1

Query: 259 DPGGGAEADQAQRHLDPHAVTTLPRPRPS 345
           D GGGA AD   RH DP+    L R RPS
Sbjct: 224 DDGGGA-ADLQLRHPDPYDRVRLSRSRPS 251


>SB_28437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 615 TTFSLFSSIMEYDSNAWENHHVAIPESTFKFTQNVF 508
           TT +L + + + +   W NH +A+P S+ K T   F
Sbjct: 26  TTNALVNDVSDIEFVLWTNHCIALPRSSKKGTHPPF 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,165,461
Number of Sequences: 59808
Number of extensions: 356622
Number of successful extensions: 888
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)