Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1364
(657 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70477-1|AAB88661.1| 498|Homo sapiens astrocytic NOVA-like RNA-... 67 4e-11
AF083898-1|AAC72355.1| 492|Homo sapiens RNA-binding protein Nov... 67 4e-11
AC006540-1|AAD13116.1| 464|Homo sapiens RNA-binding protein Nov... 67 4e-11
U04840-1|AAA16022.1| 510|Homo sapiens onconeural ventral antige... 66 8e-11
BC075039-1|AAH75039.1| 507|Homo sapiens neuro-oncological ventr... 66 8e-11
BC075038-1|AAH75038.1| 507|Homo sapiens neuro-oncological ventr... 66 8e-11
X78137-1|CAA55016.1| 356|Homo sapiens hnRNP-E1 protein. 46 2e-04
U24223-1|AAA91317.1| 356|Homo sapiens alpha-CP1 protein. 46 2e-04
BC039742-1|AAH39742.1| 356|Homo sapiens poly(rC) binding protei... 46 2e-04
AC016700-1|AAX93191.1| 356|Homo sapiens unknown protein. 46 2e-04
BC017098-1|AAH17098.1| 360|Homo sapiens PCBP4 protein protein. 44 6e-04
BC004153-1|AAH04153.1| 403|Homo sapiens poly(rC) binding protei... 44 6e-04
BC003008-1|AAH03008.1| 403|Homo sapiens poly(rC) binding protei... 44 6e-04
AK023993-1|BAB14761.1| 403|Homo sapiens protein ( Homo sapiens ... 44 6e-04
AF257772-1|AAG02186.1| 424|Homo sapiens RNA binding protein MCG... 44 6e-04
AF257771-1|AAG02185.1| 369|Homo sapiens RNA binding protein MCG... 44 6e-04
AF257770-1|AAG02184.1| 424|Homo sapiens RNA binding protein MCG... 44 6e-04
AF176330-1|AAG09241.1| 403|Homo sapiens alphaCP-4 protein. 44 6e-04
AF141340-1|AAG49443.1| 276|Homo sapiens LYST-interacting protei... 44 6e-04
AF092441-1|AAP97216.1| 397|Homo sapiens CBP protein. 44 6e-04
X78136-1|CAA55015.1| 365|Homo sapiens hnRNP-E2 protein. 42 0.002
BC107688-1|AAI07689.1| 335|Homo sapiens PCBP2 protein protein. 42 0.002
BC071942-1|AAH71942.1| 366|Homo sapiens poly(rC) binding protei... 42 0.002
BC001155-1|AAH01155.1| 362|Homo sapiens poly(rC) binding protei... 42 0.002
AB208825-1|BAD92062.1| 373|Homo sapiens poly(rC)-binding protei... 42 0.002
AB188306-1|BAD36897.1| 331|Homo sapiens poly(rC) binding protei... 42 0.002
X72727-1|CAA51267.1| 464|Homo sapiens transformation upregulate... 42 0.003
S74678-1|AAB20770.1| 463|Homo sapiens heterogeneous nuclear rib... 42 0.003
CR456771-1|CAG33052.1| 464|Homo sapiens HNRPK protein. 42 0.003
BC014980-1|AAH14980.1| 463|Homo sapiens heterogeneous nuclear r... 42 0.003
BC000355-1|AAH00355.1| 464|Homo sapiens heterogeneous nuclear r... 42 0.003
AY911506-1|AAW84289.1| 464|Homo sapiens heterogeneous nuclear r... 42 0.003
AL354733-11|CAI16021.1| 464|Homo sapiens heterogeneous nuclear ... 42 0.003
AL354733-10|CAI16020.1| 463|Homo sapiens heterogeneous nuclear ... 42 0.003
AL354733-9|CAI16019.1| 428|Homo sapiens heterogeneous nuclear r... 42 0.003
AB209562-1|BAD92799.1| 442|Homo sapiens heterogeneous nuclear r... 42 0.003
BC012061-1|AAH12061.1| 313|Homo sapiens PCBP3 protein protein. 40 0.008
AY780793-1|AAV98363.1| 361|Homo sapiens poly(rC) binding protei... 40 0.008
AK094301-1|BAC04327.1| 351|Homo sapiens protein ( Homo sapiens ... 40 0.008
AF176329-1|AAG09240.1| 339|Homo sapiens alphaCP-3 protein. 40 0.008
U05040-1|AAA17976.2| 644|Homo sapiens FUSE binding protein prot... 32 2.1
BC017247-1|AAH17247.1| 653|Homo sapiens FUBP1 protein protein. 32 2.1
AB209366-1|BAD92603.1| 493|Homo sapiens far upstream element-bi... 32 2.1
BC065269-1|AAH65269.1| 579|Homo sapiens insulin-like growth fac... 31 2.7
AF117108-1|AAD09828.1| 579|Homo sapiens IGF-II mRNA-binding pro... 31 2.7
BC032783-1|AAH32783.1| 572|Homo sapiens glycoprotein (transmemb... 30 8.3
>U70477-1|AAB88661.1| 498|Homo sapiens astrocytic NOVA-like
RNA-binding protein protein.
Length = 498
Score = 67.3 bits (157), Expect = 4e-11
Identities = 33/65 (50%), Positives = 43/65 (66%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V +A + + G GG++ +E Q+++GA IQISKKG F PGTRNR VTI+GS A
Sbjct: 415 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQA 474
Query: 237 AHYLI 251
A YLI
Sbjct: 475 AQYLI 479
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/65 (32%), Positives = 39/65 (60%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V + SY + + + G GG++ +++Q+ +GA I++SK F PGT R+ + G+ A++
Sbjct: 43 VLIPSYAAGS--IIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 100
Query: 237 AHYLI 251
H I
Sbjct: 101 VHSFI 105
>AF083898-1|AAC72355.1| 492|Homo sapiens RNA-binding protein Nova-2
protein.
Length = 492
Score = 67.3 bits (157), Expect = 4e-11
Identities = 33/65 (50%), Positives = 43/65 (66%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V +A + + G GG++ +E Q+++GA IQISKKG F PGTRNR VTI+GS A
Sbjct: 409 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQA 468
Query: 237 AHYLI 251
A YLI
Sbjct: 469 AQYLI 473
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/65 (32%), Positives = 39/65 (60%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V + SY + + + G GG++ +++Q+ +GA I++SK F PGT R+ + G+ A++
Sbjct: 37 VLIPSYAAGS--IIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 94
Query: 237 AHYLI 251
H I
Sbjct: 95 VHSFI 99
>AC006540-1|AAD13116.1| 464|Homo sapiens RNA-binding protein Nova-2
[AA 29-492] protein.
Length = 464
Score = 67.3 bits (157), Expect = 4e-11
Identities = 33/65 (50%), Positives = 43/65 (66%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V +A + + G GG++ +E Q+++GA IQISKKG F PGTRNR VTI+GS A
Sbjct: 381 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQA 440
Query: 237 AHYLI 251
A YLI
Sbjct: 441 AQYLI 445
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/65 (32%), Positives = 39/65 (60%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V + SY + + + G GG++ +++Q+ +GA I++SK F PGT R+ + G+ A++
Sbjct: 9 VLIPSYAAGS--IIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 66
Query: 237 AHYLI 251
H I
Sbjct: 67 VHSFI 71
>U04840-1|AAA16022.1| 510|Homo sapiens onconeural ventral antigen-1
protein.
Length = 510
Score = 66.5 bits (155), Expect = 8e-11
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V +A + + G GG++ +E Q+++GA IQISKKG F PGTRNR VTI+G+ A
Sbjct: 427 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 486
Query: 237 AHYLI 251
A YLI
Sbjct: 487 AQYLI 491
>BC075039-1|AAH75039.1| 507|Homo sapiens neuro-oncological ventral
antigen 1 protein.
Length = 507
Score = 66.5 bits (155), Expect = 8e-11
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V +A + + G GG++ +E Q+++GA IQISKKG F PGTRNR VTI+G+ A
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 483
Query: 237 AHYLI 251
A YLI
Sbjct: 484 AQYLI 488
Score = 44.0 bits (99), Expect = 5e-04
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V + SY + + + G GG++ +++Q+ +GA I++SK F PGT R+ I G+ A++
Sbjct: 54 VLIPSYAAGS--IIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNA 111
Query: 237 AHYLI 251
H I
Sbjct: 112 VHGFI 116
>BC075038-1|AAH75038.1| 507|Homo sapiens neuro-oncological ventral
antigen 1 protein.
Length = 507
Score = 66.5 bits (155), Expect = 8e-11
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V +A + + G GG++ +E Q+++GA IQISKKG F PGTRNR VTI+G+ A
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 483
Query: 237 AHYLI 251
A YLI
Sbjct: 484 AQYLI 488
Score = 44.0 bits (99), Expect = 5e-04
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = +3
Query: 57 VHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISN 236
V + SY + + + G GG++ +++Q+ +GA I++SK F PGT R+ I G+ A++
Sbjct: 54 VLIPSYAAGS--IIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNA 111
Query: 237 AHYLI 251
H I
Sbjct: 112 VHGFI 116
>X78137-1|CAA55016.1| 356|Homo sapiens hnRNP-E1 protein.
Length = 356
Score = 45.6 bits (103), Expect = 2e-04
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 36 VDRQTAHVHLASYPSST-NCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTIS 212
+D T H + P++ C+ G G + EI+QMSGA I+I+ G+ R VTI+
Sbjct: 274 LDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTIT 330
Query: 213 GSQTAISNAHYLI 251
GS +IS A YLI
Sbjct: 331 GSAASISLAQYLI 343
>U24223-1|AAA91317.1| 356|Homo sapiens alpha-CP1 protein.
Length = 356
Score = 45.6 bits (103), Expect = 2e-04
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 36 VDRQTAHVHLASYPSST-NCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTIS 212
+D T H + P++ C+ G G + EI+QMSGA I+I+ G+ R VTI+
Sbjct: 274 LDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTIT 330
Query: 213 GSQTAISNAHYLI 251
GS +IS A YLI
Sbjct: 331 GSAASISLAQYLI 343
>BC039742-1|AAH39742.1| 356|Homo sapiens poly(rC) binding protein 1
protein.
Length = 356
Score = 45.6 bits (103), Expect = 2e-04
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 36 VDRQTAHVHLASYPSST-NCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTIS 212
+D T H + P++ C+ G G + EI+QMSGA I+I+ G+ R VTI+
Sbjct: 274 LDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTIT 330
Query: 213 GSQTAISNAHYLI 251
GS +IS A YLI
Sbjct: 331 GSAASISLAQYLI 343
>AC016700-1|AAX93191.1| 356|Homo sapiens unknown protein.
Length = 356
Score = 45.6 bits (103), Expect = 2e-04
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 36 VDRQTAHVHLASYPSST-NCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTIS 212
+D T H + P++ C+ G G + EI+QMSGA I+I+ G+ R VTI+
Sbjct: 274 LDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTIT 330
Query: 213 GSQTAISNAHYLI 251
GS +IS A YLI
Sbjct: 331 GSAASISLAQYLI 343
>BC017098-1|AAH17098.1| 360|Homo sapiens PCBP4 protein protein.
Length = 360
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
CV G G EI+QMSGA+I+I G A G R VTI+GS +I+ A YLI
Sbjct: 212 CVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGERHVTITGSPVSIALAQYLI 262
>BC004153-1|AAH04153.1| 403|Homo sapiens poly(rC) binding protein 4
protein.
Length = 403
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
CV G G EI+QMSGA+I+I G A G R VTI+GS +I+ A YLI
Sbjct: 255 CVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGERHVTITGSPVSIALAQYLI 305
>BC003008-1|AAH03008.1| 403|Homo sapiens poly(rC) binding protein 4
protein.
Length = 403
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
CV G G EI+QMSGA+I+I G A G R VTI+GS +I+ A YLI
Sbjct: 255 CVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGERHVTITGSPVSIALAQYLI 305
>AK023993-1|BAB14761.1| 403|Homo sapiens protein ( Homo sapiens
cDNA FLJ13931 fis, clone Y79AA1000752, moderately
similar to PUTATIVE HETEROGENEOUS NUCLEAR
RIBONUCLEOPROTEIN X. ).
Length = 403
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
CV G G EI+QMSGA+I+I G A G R VTI+GS +I+ A YLI
Sbjct: 255 CVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGERHVTITGSPVSIALAQYLI 305
>AF257772-1|AAG02186.1| 424|Homo sapiens RNA binding protein MCG10
protein.
Length = 424
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
CV G G EI+QMSGA+I+I G A G R VTI+GS +I+ A YLI
Sbjct: 276 CVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGERHVTITGSPVSIALAQYLI 326
>AF257771-1|AAG02185.1| 369|Homo sapiens RNA binding protein MCG10
protein.
Length = 369
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
CV G G EI+QMSGA+I+I G A G R VTI+GS +I+ A YLI
Sbjct: 221 CVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGERHVTITGSPVSIALAQYLI 271
>AF257770-1|AAG02184.1| 424|Homo sapiens RNA binding protein MCG10
protein.
Length = 424
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
CV G G EI+QMSGA+I+I G A G R VTI+GS +I+ A YLI
Sbjct: 276 CVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGERHVTITGSPVSIALAQYLI 326
>AF176330-1|AAG09241.1| 403|Homo sapiens alphaCP-4 protein.
Length = 403
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
CV G G EI+QMSGA+I+I G A G R VTI+GS +I+ A YLI
Sbjct: 255 CVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGERHVTITGSPVSIALAQYLI 305
>AF141340-1|AAG49443.1| 276|Homo sapiens LYST-interacting protein
LIP4 protein.
Length = 276
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
CV G G EI+QMSGA+I+I G A G R VTI+GS +I+ A YLI
Sbjct: 98 CVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGERHVTITGSPVSIALAQYLI 148
>AF092441-1|AAP97216.1| 397|Homo sapiens CBP protein.
Length = 397
Score = 43.6 bits (98), Expect = 6e-04
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
CV G G EI+QMSGA+I+I G A G R VTI+GS +I+ A YLI
Sbjct: 255 CVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGERHVTITGSPVSIALAQYLI 305
>X78136-1|CAA55015.1| 365|Homo sapiens hnRNP-E2 protein.
Length = 365
Score = 41.9 bits (94), Expect = 0.002
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
C+ G G EI+QMSGA I+I+ G+ +R VTI+GS +IS A YLI
Sbjct: 301 CIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLI 351
>BC107688-1|AAI07689.1| 335|Homo sapiens PCBP2 protein protein.
Length = 335
Score = 41.9 bits (94), Expect = 0.002
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
C+ G G EI+QMSGA I+I+ G+ +R VTI+GS +IS A YLI
Sbjct: 271 CIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLI 321
>BC071942-1|AAH71942.1| 366|Homo sapiens poly(rC) binding protein 2
protein.
Length = 366
Score = 41.9 bits (94), Expect = 0.002
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
C+ G G EI+QMSGA I+I+ G+ +R VTI+GS +IS A YLI
Sbjct: 302 CIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLI 352
>BC001155-1|AAH01155.1| 362|Homo sapiens poly(rC) binding protein 2
protein.
Length = 362
Score = 41.9 bits (94), Expect = 0.002
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
C+ G G EI+QMSGA I+I+ G+ +R VTI+GS +IS A YLI
Sbjct: 298 CIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLI 348
>AB208825-1|BAD92062.1| 373|Homo sapiens poly(rC)-binding protein 2
isoform b variant protein.
Length = 373
Score = 41.9 bits (94), Expect = 0.002
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
C+ G G EI+QMSGA I+I+ G+ +R VTI+GS +IS A YLI
Sbjct: 309 CIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLI 359
>AB188306-1|BAD36897.1| 331|Homo sapiens poly(rC) binding protein 2
protein.
Length = 331
Score = 41.9 bits (94), Expect = 0.002
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +3
Query: 90 CVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
C+ G G EI+QMSGA I+I+ G+ +R VTI+GS +IS A YLI
Sbjct: 267 CIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLI 317
>X72727-1|CAA51267.1| 464|Homo sapiens transformation upregulated
nuclear protein protein.
Length = 464
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG+ +I+ SGA+I+I + G+ +RI+TI+G+Q I NA YL++
Sbjct: 404 GKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQ 452
>S74678-1|AAB20770.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein complex K protein.
Length = 463
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG+ +I+ SGA+I+I + G+ +RI+TI+G+Q I NA YL++
Sbjct: 404 GKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQ 452
>CR456771-1|CAG33052.1| 464|Homo sapiens HNRPK protein.
Length = 464
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG+ +I+ SGA+I+I + G+ +RI+TI+G+Q I NA YL++
Sbjct: 404 GKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQ 452
>BC014980-1|AAH14980.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 463
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG+ +I+ SGA+I+I + G+ +RI+TI+G+Q I NA YL++
Sbjct: 404 GKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQ 452
>BC000355-1|AAH00355.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 464
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG+ +I+ SGA+I+I + G+ +RI+TI+G+Q I NA YL++
Sbjct: 404 GKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQ 452
>AY911506-1|AAW84289.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K transcript variant protein.
Length = 464
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG+ +I+ SGA+I+I + G+ +RI+TI+G+Q I NA YL++
Sbjct: 404 GKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQ 452
>AL354733-11|CAI16021.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 464
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG+ +I+ SGA+I+I + G+ +RI+TI+G+Q I NA YL++
Sbjct: 404 GKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQ 452
>AL354733-10|CAI16020.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 463
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG+ +I+ SGA+I+I + G+ +RI+TI+G+Q I NA YL++
Sbjct: 404 GKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQ 452
>AL354733-9|CAI16019.1| 428|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 428
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG+ +I+ SGA+I+I + G+ +RI+TI+G+Q I NA YL++
Sbjct: 369 GKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQ 417
>AB209562-1|BAD92799.1| 442|Homo sapiens heterogeneous nuclear
ribonucleoprotein K isoform a variant protein.
Length = 442
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG+ +I+ SGA+I+I + G+ +RI+TI+G+Q I NA YL++
Sbjct: 382 GKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQ 430
>BC012061-1|AAH12061.1| 313|Homo sapiens PCBP3 protein protein.
Length = 313
Score = 39.9 bits (89), Expect = 0.008
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 51 AHVHLASYPSST-NCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTA 227
A H + P+ C+ G G EI+QMSGA I+I+ G+ R +TI+G+
Sbjct: 235 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA---TEGSSERQITITGTPAN 291
Query: 228 ISNAHYLI 251
IS A YLI
Sbjct: 292 ISLAQYLI 299
>AY780793-1|AAV98363.1| 361|Homo sapiens poly(rC) binding protein 3
protein.
Length = 361
Score = 39.9 bits (89), Expect = 0.008
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 51 AHVHLASYPSST-NCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTA 227
A H + P+ C+ G G EI+QMSGA I+I+ G+ R +TI+G+
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA---TEGSSERQITITGTPAN 339
Query: 228 ISNAHYLI 251
IS A YLI
Sbjct: 340 ISLAQYLI 347
>AK094301-1|BAC04327.1| 351|Homo sapiens protein ( Homo sapiens
cDNA FLJ36982 fis, clone BRACE2006488, highly similar to
POLY(RC) BINDING PROTEIN 2. ).
Length = 351
Score = 39.9 bits (89), Expect = 0.008
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 51 AHVHLASYPSST-NCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTA 227
A H + P+ C+ G G EI+QMSGA I+I+ G+ R +TI+G+
Sbjct: 273 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA---TEGSSERQITITGTPAN 329
Query: 228 ISNAHYLI 251
IS A YLI
Sbjct: 330 ISLAQYLI 337
>AF176329-1|AAG09240.1| 339|Homo sapiens alphaCP-3 protein.
Length = 339
Score = 39.9 bits (89), Expect = 0.008
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 51 AHVHLASYPSST-NCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTA 227
A H + P+ C+ G G EI+QMSGA I+I+ G+ R +TI+G+
Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA---TEGSSERQITITGTPAN 317
Query: 228 ISNAHYLI 251
IS A YLI
Sbjct: 318 ISLAQYLI 325
>U05040-1|AAA17976.2| 644|Homo sapiens FUSE binding protein
protein.
Length = 644
Score = 31.9 bits (69), Expect = 2.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 84 TNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
T + G GG + I Q SGA I++ + ++ TI G+ I A LIE
Sbjct: 388 TGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 444
>BC017247-1|AAH17247.1| 653|Homo sapiens FUBP1 protein protein.
Length = 653
Score = 31.9 bits (69), Expect = 2.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 84 TNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
T + G GG + I Q SGA I++ + ++ TI G+ I A LIE
Sbjct: 387 TGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 443
>AB209366-1|BAD92603.1| 493|Homo sapiens far upstream
element-binding protein variant protein.
Length = 493
Score = 31.9 bits (69), Expect = 2.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 84 TNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
T + G GG + I Q SGA I++ + ++ TI G+ I A LIE
Sbjct: 238 TGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 294
>BC065269-1|AAH65269.1| 579|Homo sapiens insulin-like growth factor
2 mRNA binding protein 3 protein.
Length = 579
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 18 PPVYHYVDRQTAHVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNR 197
PP + +T VHL S + G G+ ++ + +GA+I+I+ AP + R
Sbjct: 395 PPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAP--AEAPDAKVR 452
Query: 198 IVTISGSQTA 227
+V I+G A
Sbjct: 453 MVIITGPPEA 462
>AF117108-1|AAD09828.1| 579|Homo sapiens IGF-II mRNA-binding
protein 3 protein.
Length = 579
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 18 PPVYHYVDRQTAHVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNR 197
PP + +T VHL S + G G+ ++ + +GA+I+I+ AP + R
Sbjct: 395 PPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAP--AEAPDAKVR 452
Query: 198 IVTISGSQTA 227
+V I+G A
Sbjct: 453 MVIITGPPEA 462
>BC032783-1|AAH32783.1| 572|Homo sapiens glycoprotein
(transmembrane) nmb protein.
Length = 572
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 63 LASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTF 176
L SY S+T PGP G + LE+ ++ N QI++ G F
Sbjct: 343 LKSYDSNT---PGPAGDNPLELSRIPDENCQINRYGHF 377
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,771,512
Number of Sequences: 237096
Number of extensions: 1865847
Number of successful extensions: 4666
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 4430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4631
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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