Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1364
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80444-7|AAO12447.1|  380|Caenorhabditis elegans Hypothetical pr...    36   0.033
U80444-5|AAB37791.1|  397|Caenorhabditis elegans Hypothetical pr...    36   0.033
AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassi...    34   0.077
AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical ...    34   0.077
Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL132898-7|CAC14410.1|  413|Caenorhabditis elegans Hypothetical ...    30   1.7  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    29   2.2  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    29   3.8  
U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U80444-7|AAO12447.1|  380|Caenorhabditis elegans Hypothetical
           protein F26B1.2c protein.
          Length = 380

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = +3

Query: 48  TAHVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTA 227
           TA V + S    T  + G GG     I+Q SGA I + +      G   RI+TI G++  
Sbjct: 301 TAQVTIPSDLGGT--IIGRGGERIARIRQESGAQITLEQSN----GQPERIITIKGTEQQ 354

Query: 228 ISNAHYLIE 254
           I +A YL++
Sbjct: 355 IHSAQYLLQ 363


>U80444-5|AAB37791.1|  397|Caenorhabditis elegans Hypothetical
           protein F26B1.2a protein.
          Length = 397

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = +3

Query: 48  TAHVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTA 227
           TA V + S    T  + G GG     I+Q SGA I + +      G   RI+TI G++  
Sbjct: 318 TAQVTIPSDLGGT--IIGRGGERIARIRQESGAQITLEQSN----GQPERIITIKGTEQQ 371

Query: 228 ISNAHYLIE 254
           I +A YL++
Sbjct: 372 IHSAQYLLQ 380


>AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassium
           channel protein.
          Length = 580

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1   LIAPPSPPCTIMSIDKPLTCISPHTHLQLTA-SQGREGAAGWR 126
           L   PSPP  I     P  C+SP   L  T+ S  R G+ GW+
Sbjct: 538 LTISPSPPALISRPVSPAACLSPRDQLSPTSISSQRSGSPGWQ 580


>AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical
           protein Y54G9A.3 protein.
          Length = 621

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1   LIAPPSPPCTIMSIDKPLTCISPHTHLQLTA-SQGREGAAGWR 126
           L   PSPP  I     P  C+SP   L  T+ S  R G+ GW+
Sbjct: 579 LTISPSPPALISRPVSPAACLSPRDQLSPTSISSQRSGSPGWQ 621


>Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical
           protein C12D8.1c protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +3

Query: 36  VDRQTAHVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISG 215
           V  + +  +++   +    V G GG +  +I   SGA+ ++S+  T       ++  I G
Sbjct: 272 VSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPT--GNADEKVFVIKG 329

Query: 216 SQTAISNAHYLI 251
            + AI +A +LI
Sbjct: 330 GKRAIEHAKHLI 341


>Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical
           protein C12D8.1b protein.
          Length = 611

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +3

Query: 36  VDRQTAHVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISG 215
           V  + +  +++   +    V G GG +  +I   SGA+ ++S+  T       ++  I G
Sbjct: 335 VSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPT--GNADEKVFVIKG 392

Query: 216 SQTAISNAHYLI 251
            + AI +A +LI
Sbjct: 393 GKRAIEHAKHLI 404


>Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical
           protein C12D8.1a protein.
          Length = 589

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +3

Query: 36  VDRQTAHVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISG 215
           V  + +  +++   +    V G GG +  +I   SGA+ ++S+  T       ++  I G
Sbjct: 313 VSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPT--GNADEKVFVIKG 370

Query: 216 SQTAISNAHYLI 251
            + AI +A +LI
Sbjct: 371 GKRAIEHAKHLI 382


>AL132898-7|CAC14410.1|  413|Caenorhabditis elegans Hypothetical
           protein Y59A8B.10 protein.
          Length = 413

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 78  SSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISG 215
           ++   + G GG +   ++  +   +Q+SK     PGT  RI  + G
Sbjct: 51  NAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVKG 96


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 78  SSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
           S    V G GG +  +I Q SGA+ ++S+     P    +   I GS+  + +A +LI
Sbjct: 335 SKCGLVIGRGGETIKQINQESGAHCELSRDPNTNP--IEKTFVIRGSEAQVEHAKHLI 390


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 547 NPRVHVQVYTKRF*LLFLLCVAIYELDASCC*GVSGCKYSFESE 416
           NP  + Q+Y++RF +  L    +Y   +      SGC+Y + SE
Sbjct: 107 NPLKYQQLYSQRFTIGMLFTANMYAFASIIVLYTSGCRYFWSSE 150


>U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical
           protein M01A10.1 protein.
          Length = 680

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +3

Query: 78  SSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
           S    V G GG +  +I + SGA  ++S+  + +   +  +  I GS+T + +A +LI
Sbjct: 420 SKCGLVIGRGGETIRQINKESGAYCEMSRDPSISAIEKQFV--IRGSETQVEHAKHLI 475


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,282
Number of Sequences: 27780
Number of extensions: 261546
Number of successful extensions: 690
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)