Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1364
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04430.2 68418.m00438 KH domain-containing protein NOVA, puta... 54 1e-07
At5g04430.1 68418.m00437 KH domain-containing protein NOVA, puta... 54 1e-07
At2g25970.1 68415.m03117 KH domain-containing protein 34 0.096
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 32 0.29
At5g04470.1 68418.m00445 expressed protein 31 0.51
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 31 0.67
At4g30990.1 68417.m04398 expressed protein ; expression supporte... 29 2.1
At1g76660.1 68414.m08920 expressed protein 29 3.6
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 4.8
At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 fami... 28 6.3
At4g18375.2 68417.m02727 KH domain-containing protein contains s... 28 6.3
At4g18375.1 68417.m02726 KH domain-containing protein contains s... 28 6.3
At1g77300.1 68414.m09002 SET domain-containing protein similar t... 27 8.3
At1g14480.1 68414.m01717 ankyrin repeat family protein contains ... 27 8.3
At1g08760.1 68414.m00975 expressed protein similar to At1g21030,... 27 8.3
>At5g04430.2 68418.m00438 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 334
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/54 (50%), Positives = 37/54 (68%)
Frame = +3
Query: 93 VPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
V G GGR+ +EI QM+GA I+IS +G F GT +R V+I+G Q AI A +I+
Sbjct: 269 VLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMIK 322
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/66 (39%), Positives = 35/66 (53%)
Frame = +3
Query: 54 HVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAIS 233
H+ ++ V G GG + E Q SGA IQ+S+ F PGT +RI+ ISGS +
Sbjct: 36 HIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVV 95
Query: 234 NAHYLI 251
N LI
Sbjct: 96 NGLELI 101
>At5g04430.1 68418.m00437 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 313
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/54 (50%), Positives = 37/54 (68%)
Frame = +3
Query: 93 VPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
V G GGR+ +EI QM+GA I+IS +G F GT +R V+I+G Q AI A +I+
Sbjct: 248 VLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMIK 301
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/66 (39%), Positives = 35/66 (53%)
Frame = +3
Query: 54 HVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAIS 233
H+ ++ V G GG + E Q SGA IQ+S+ F PGT +RI+ ISGS +
Sbjct: 36 HIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVV 95
Query: 234 NAHYLI 251
N LI
Sbjct: 96 NGLELI 101
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 33.9 bits (74), Expect = 0.096
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLI 251
G GG + +Q SGA IQ+++ P R V ++G+ IS A LI
Sbjct: 150 GKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLI 200
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 36 VDRQTAHVHLASYPSS-TNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTIS 212
VD + PSS + G GG + +Q SGA IQI + P + R V I
Sbjct: 170 VDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEII 229
Query: 213 GSQTAISNAHYLI 251
GS I +A LI
Sbjct: 230 GSVACIESAEKLI 242
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 99 GPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIE 254
G GG + +Q SGA Q+ + G + R V ISG + I A +I+
Sbjct: 288 GRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTVRISGDKMQIDIATDMIK 339
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 247 SSREDPGGGAEADQAQRHLDPHAVTTLPRPRPSAPR 354
++R+D GGG + H P T P P P PR
Sbjct: 24 TNRDDDGGGCTTPTSSDHKIPPTTATTPPPPPQKPR 59
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 31.1 bits (67), Expect = 0.67
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 36 VDRQTAHVHLASYPSS-TNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTIS 212
VD + PSS + G GG +Q SGA IQI + P + R V I
Sbjct: 226 VDDTQSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEII 285
Query: 213 GSQTAISNAHYLI 251
G+ + I A LI
Sbjct: 286 GTVSCIEKAEKLI 298
>At4g30990.1 68417.m04398 expressed protein ; expression supported
by MPSS
Length = 2138
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 460 MTHLIRKSQRKVKIAVKNVLCKLERGLWDCDVMIFP 567
+ ++K Q VK KN+LC + +W+ + P
Sbjct: 354 LREFLKKDQSVVKAFTKNILCAINNMIWESSEEVIP 389
>At1g76660.1 68414.m08920 expressed protein
Length = 431
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 1 LIAPPSPPCTIMSIDKPLTCISPHTHLQLTAS 96
L+APPS P + + P T SP+ +L L A+
Sbjct: 68 LLAPPSSPASFTNSALPSTTQSPNCYLSLAAN 99
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 277 EADQAQRHLDPHAVTTLPRPRPSAP 351
+ A R D H VT+LP P+P +P
Sbjct: 200 QQQNASRPSDNHVVTSLPPPKPPSP 224
>At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 family
protein low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 432
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 171 TFAPGTRNRIVTISGSQTA 227
+F PG+ NRIV ++GSQ++
Sbjct: 99 SFKPGSENRIVMVTGSQSS 117
>At4g18375.2 68417.m02727 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 606
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 39 DRQTAHVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGS 218
D + + L CV G G EI++ + ANI ISK G ++ +V +SG
Sbjct: 391 DAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK------GKKDDLVEVSGE 444
Query: 219 QTAISNA 239
+++ +A
Sbjct: 445 VSSVRDA 451
>At4g18375.1 68417.m02726 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 532
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 39 DRQTAHVHLASYPSSTNCVPGPGGRSWLEIQQMSGANIQISKKGTFAPGTRNRIVTISGS 218
D + + L CV G G EI++ + ANI ISK G ++ +V +SG
Sbjct: 391 DAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK------GKKDDLVEVSGE 444
Query: 219 QTAISNA 239
+++ +A
Sbjct: 445 VSSVRDA 451
>At1g77300.1 68414.m09002 SET domain-containing protein similar to
huntingtin interacting protein 1 [Homo sapiens]
GI:12697196; contains Pfam profile PF00856: SET domain
Length = 1759
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 235 TLTTSSREDPGGGAEADQAQRHLDPHAVTTLPRPRP 342
T ++ SR PGG +D+ +H LPRPRP
Sbjct: 1288 TSSSLSRMSPGG-TNSDKTTKHGSGEDKKILPRPRP 1322
>At1g14480.1 68414.m01717 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 412
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = -1
Query: 627 VFQDTTFSLFSS-----IMEYDSNAWENHHVAIPESTFKFTQNVFDCYF 496
VF TF+LF ++E + W H +P+S F + V Y+
Sbjct: 363 VFLSATFALFLVFALYLLLEAFVDTWRKHRTVVPKSRFSWFWKVLQYYY 411
>At1g08760.1 68414.m00975 expressed protein similar to At1g21030,
At5g44890, At2g29240, At1g08740; similar to EST
gb|N96641
Length = 748
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 47 NRSRASRLIPIFN*LRPRAGRAQLVGDTADVRGQH 151
+R +S +PI +RP GR VGD D+ H
Sbjct: 88 DRVESSSPVPILRGVRPVPGRHPCVGDPEDIVATH 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,067,843
Number of Sequences: 28952
Number of extensions: 236468
Number of successful extensions: 639
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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