Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1363
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0272 - 23738514-23738817,23739382-23740748 32 0.48
01_06_0456 + 29521282-29522064 32 0.48
01_01_0613 - 4571689-4572348 29 2.6
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 3.4
06_01_0860 - 6514921-6515034,6515125-6515196,6515344-6515400,651... 29 4.5
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 4.5
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 29 4.5
06_03_1448 + 30235336-30236763 28 5.9
06_03_1443 + 30182018-30183445 28 5.9
06_03_1440 + 30166515-30167942 28 5.9
06_03_1437 + 30151030-30152457 28 5.9
06_03_1429 + 30100834-30102261 28 5.9
06_03_1425 + 30084383-30085810 28 5.9
06_03_1420 - 30053713-30055140 28 5.9
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 7.8
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 28 7.8
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 300 GHLRYS-LTDVPPQSNSRLAVSSNRITREF*TATSVSATSPLCTLGTKH 157
G RY+ +TDVPP N L V N IT EF T + +P ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 251 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 129
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>01_01_0613 - 4571689-4572348
Length = 219
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -1
Query: 309 LALGHLRYSLTDVPPQSNSRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 133
L LGH YSL PP S + N ++ ++S SA + +G + R+ +++D
Sbjct: 51 LELGHSVYSLPLPPPPSQPVVVAGGN--NDQYGVSSSSSAAATTSRIGFRTRSEVEVLD 107
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 354 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSRLAVSSNRITREF*TA-TSVSATSPL 178
+F P+ P LA + GH R+ + D + S LA N+ R + +VSA + L
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELS-LAGIFNKGDRSYAVRRAAVSAYAAL 424
Query: 177 CTLGTKHRAPADIIDR 130
C + H AP + DR
Sbjct: 425 CAVLCAHEAPGGLPDR 440
>06_01_0860 -
6514921-6515034,6515125-6515196,6515344-6515400,
6515512-6515650,6515737-6515921,6516043-6516126,
6516552-6516674,6518043-6518219,6518331-6518400,
6518478-6518574,6519022-6519097,6519240-6519329,
6519548-6519655,6520715-6520756,6520854-6521045,
6521239-6521309,6521396-6521550,6521999-6522064,
6522769-6522820,6523476-6523566,6523897-6524094,
6524173-6524267,6524361-6524485,6524586-6525016
Length = 969
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -1
Query: 387 VPMRTEHLDQASFCPFAPREV-SVLAELALGHLRYSLTDVPPQSNSRLAVSSNRITREF* 211
VP L SF + + +L++ HLR+ DV + SRL S RI +
Sbjct: 127 VPWEKATLSWRSFPYYVDEDARQLLSDCVAAHLRHK--DVALEYGSRLQSSGGRILLQSL 184
Query: 210 TATSVSATSPLCTLGTKHRAPADIIDRAPLPP 115
+ T + + L + R P ++D + L P
Sbjct: 185 SGTELYRERLVKALAHELRVPLLVLDSSVLAP 216
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 184 TTLHAWNETPCARRYY 137
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_05_0117 -
18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +1
Query: 325 NLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIKSF*QEVPEK----LPQG*LACGSQAFI 492
+L W R+KA ++ TH+ + + +++ Q VPE+ + Q L G
Sbjct: 324 SLVWKVRSKAAASKLTCTHKALQVSGRVTYNGHGMEQFVPERTAAYISQEDLHAGEMTVR 383
Query: 493 ATLLFVLRC 519
TL F RC
Sbjct: 384 ETLAFSARC 392
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 253 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 119
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 253 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 119
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 253 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 119
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 253 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 119
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 253 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 119
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 253 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 119
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 253 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 119
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 148 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGV*LG 267
G+T+ R R A W RG A RR +LP G +AG LG
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLG 77
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 417 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF 506
YK F A G RKV GIT + PS+ D+AF
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAF 663
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,226,049
Number of Sequences: 37544
Number of extensions: 432461
Number of successful extensions: 1131
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -