Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1363
         (672 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121698-1|AAM52025.1| 1228|Drosophila melanogaster RE70806p pro...    29   4.4  
AF210316-1|AAF19446.1| 1235|Drosophila melanogaster hibris protein.    29   4.4  
AE013599-2004|AAF58172.3| 1228|Drosophila melanogaster CG7449-PA...    29   4.4  
AE013599-2003|AAO41390.1| 1235|Drosophila melanogaster CG7449-PB...    29   4.4  

>AY121698-1|AAM52025.1| 1228|Drosophila melanogaster RE70806p
           protein.
          Length = 1228

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 186 TWRKRSSPFKTPA*SGSRTLPGGSLTGAVHLSKNNAGV 299
           TW K   P  + + SG R +  G       LS+N+AGV
Sbjct: 678 TWTKDGLPISSNSLSGQRLISDGPRLNISRLSRNDAGV 715


>AF210316-1|AAF19446.1| 1235|Drosophila melanogaster hibris protein.
          Length = 1235

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 186 TWRKRSSPFKTPA*SGSRTLPGGSLTGAVHLSKNNAGV 299
           TW K   P  + + SG R +  G       LS+N+AGV
Sbjct: 678 TWTKDGLPISSNSLSGQRLISDGPRLNISRLSRNDAGV 715


>AE013599-2004|AAF58172.3| 1228|Drosophila melanogaster CG7449-PA,
           isoform A protein.
          Length = 1228

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 186 TWRKRSSPFKTPA*SGSRTLPGGSLTGAVHLSKNNAGV 299
           TW K   P  + + SG R +  G       LS+N+AGV
Sbjct: 678 TWTKDGLPISSNSLSGQRLISDGPRLNISRLSRNDAGV 715


>AE013599-2003|AAO41390.1| 1235|Drosophila melanogaster CG7449-PB,
           isoform B protein.
          Length = 1235

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 186 TWRKRSSPFKTPA*SGSRTLPGGSLTGAVHLSKNNAGV 299
           TW K   P  + + SG R +  G       LS+N+AGV
Sbjct: 678 TWTKDGLPISSNSLSGQRLISDGPRLNISRLSRNDAGV 715


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,147,946
Number of Sequences: 53049
Number of extensions: 687617
Number of successful extensions: 1703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1703
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)