Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1363
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA... 36 0.025
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA... 36 0.025
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA... 36 0.025
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 30 1.2
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 30 1.2
At5g38450.1 68418.m04648 cytochrome P450 family protein similar ... 29 2.1
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 2.8
At3g50060.1 68416.m05473 myb family transcription factor contain... 29 2.8
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica... 29 2.8
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 28 4.9
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 28 4.9
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 6.5
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi... 27 8.6
At3g60590.3 68416.m06778 expressed protein 27 8.6
At3g60590.2 68416.m06779 expressed protein 27 8.6
At3g60590.1 68416.m06780 expressed protein 27 8.6
>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -1
Query: 312 ELALGHLRYSLTDVPPQSNSRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 133
++ GH +TD PP SNSRL + NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 384
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -1
Query: 312 ELALGHLRYSLTDVPPQSNSRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 133
++ GH +TD PP SNSRL + NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -1
Query: 312 ELALGHLRYSLTDVPPQSNSRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 133
++ GH +TD PP SNSRL + NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 126 PLPPNRESNETMNVVVFQRRSRDTISHLCFTSHVSLQ 16
P P+R S N V ++ +RDT SHL +++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 126 PLPPNRESNETMNVVVFQRRSRDTISHLCFTSHVSLQ 16
P P+R S N V ++ +RDT SHL +++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g38450.1 68418.m04648 cytochrome P450 family protein similar to
cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus]
Length = 518
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 159 HRAPADIIDRAPLPPNRESNETM--NVVVFQRRSRDTISHLCF 37
H+ ADII R + E + + ++ V QRR HLCF
Sbjct: 204 HKLTADIISRTKFGSSFEKGKELFNHLTVLQRRCAQATRHLCF 246
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 310 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 423
LS R W RAK L+Q+ TH+ E T+Y+S ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At3g50060.1 68416.m05473 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA MYB-related protein (1107 bp)
GI:1263096
Length = 301
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 201 SSPFKTPA*SGSRTLPGGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGK 350
SS + P S S +LPG T + H + NNA + + K VE++G+
Sbjct: 195 SSSSEDPPTSLSLSLPGAENTSSSHNNNNNALMFPRFESQMKINVEERGE 244
>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
to aldehyde dehydrogenase [Arabidopsis thaliana]
GI:8574427; similar to mitochondrial aldehyde
dehydrogenase [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; identical to cDNA aldehyde
dehydrogenase AtALDH2a GI:20530140
Length = 538
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = +3
Query: 45 SGRSYR-AIVAEKPLHS-LFHYFLGWAEAVRG 134
+G+ Y+ ++ AE P+ + LF Y+ GWA+ + G
Sbjct: 147 NGKPYQQSLTAEIPMFARLFRYYAGWADKIHG 178
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 210 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRESNETMN 88
+ T+ ATSP T+ +P I R P + N+T N
Sbjct: 30 STTTTRATSPSSTISESSNSPLAISTRKPRTQRKRPNQTYN 70
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 210 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRESNETMN 88
+ T+ ATSP T+ +P I R P + N+T N
Sbjct: 30 STTTTRATSPSSTISESSNSPLAISTRKPRTQRKRPNQTYN 70
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -1
Query: 186 SPLCTLGTKHRAPADIIDRAPLPPNRESNETMNVVVFQRRSRDTIS 49
S LC LG+ R PAD I+ L R MN +V R S I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 834
Score = 27.5 bits (58), Expect = 8.6
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +2
Query: 509 SFDVGSSYHCEQIRQALDCSP 571
S +G +HC+ +++ L+C+P
Sbjct: 570 SVQLGQEFHCQLLKRGLECNP 590
>At3g60590.3 68416.m06778 expressed protein
Length = 404
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +3
Query: 405 SIL*YKEFLARGARKVTTGITGLWQ-------PSVHSDVAFCPSMSALPIIANKFAKRWI 563
+++ + F+ + +T +T WQ P V+ M L + A A W+
Sbjct: 301 AVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWV 360
Query: 564 VHPSKGNVSW 593
VH +G VSW
Sbjct: 361 VHMLRGLVSW 370
>At3g60590.2 68416.m06779 expressed protein
Length = 329
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +3
Query: 405 SIL*YKEFLARGARKVTTGITGLWQ-------PSVHSDVAFCPSMSALPIIANKFAKRWI 563
+++ + F+ + +T +T WQ P V+ M L + A A W+
Sbjct: 226 AVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWV 285
Query: 564 VHPSKGNVSW 593
VH +G VSW
Sbjct: 286 VHMLRGLVSW 295
>At3g60590.1 68416.m06780 expressed protein
Length = 236
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +3
Query: 405 SIL*YKEFLARGARKVTTGITGLWQ-------PSVHSDVAFCPSMSALPIIANKFAKRWI 563
+++ + F+ + +T +T WQ P V+ M L + A A W+
Sbjct: 133 AVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWV 192
Query: 564 VHPSKGNVSW 593
VH +G VSW
Sbjct: 193 VHMLRGLVSW 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,961,249
Number of Sequences: 28952
Number of extensions: 321473
Number of successful extensions: 862
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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