Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1362
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.17 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    28   1.6  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   3.6  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   6.3  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   6.3  
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    25   8.4  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 374 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 481
           +++ YN+   M TS+C+C++  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = +3

Query: 63  SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYF 176
           +I+   V+N I+D+  +  ++C ++W G     ++ ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 996

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 244  SEVVVSVNELDVFPAMMSLKLNGKYFLTI 158
            S V VS +  D  P ++++K+N  YF TI
Sbjct: 920  SYVRVSTSTFDKVPVVLTIKMNKHYFPTI 948


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 371 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 466
           +HN  +N + + S ++ +  +R+ V+  GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 66  IVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVK 167
           +++++  NL I    N +EY   LW  NG  I K
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = -1

Query: 179 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDQIVNYI 75
           W+VLF + L+  ++ P     V  LHGV + VN  + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 100 TRDGTPWSTATSCGSATDRILSKSTSH*ALDSSWPEIRQAHLQKLQPRSEARSTTNPS 273
           T +G P + ++   + T  + S      AL   W  +     +++   S++ STTNPS
Sbjct: 407 TFNGVPNANSSGFAAHTQDLSSVIPRRIALRDGWTMLPIPGTRRIPTYSQSTSTTNPS 464


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 516 RPVLHLQPRIQRCLGARYDRERL 584
           RP +H  P+I R LG  YD   L
Sbjct: 106 RPDVHALPKIYRTLGGDYDERVL 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,533
Number of Sequences: 5004
Number of extensions: 56573
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)