Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1362
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)                  28   6.7  
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 28   8.9  

>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -3

Query: 654  NEPRVDFRKTGDFTVVSNG-LAVSRGVHDRIELQGIVEFAVVDEEQDVVLYLAGWKNHCS 478
            +E  V   +    T VS+  LA  + + + +    IVE   VD+E + +LY A  ++  +
Sbjct: 825  SEDDVTATRAASITAVSHPELARPQSLDENV---AIVEPESVDKEVNQILYYADIRSEVA 881

Query: 477  LVLSALLPPY 448
             V  ALLP Y
Sbjct: 882  FVAPALLPQY 891


>SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 510 KRRPVLHLQPRIQRCLGARYDRERLGRPQGRW 605
           +RRP       IQR L +  DR+ LGR Q RW
Sbjct: 11  RRRPGGKAFTCIQRFLSSTNDRDLLGRQQSRW 42


>SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)
          Length = 309

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 531 LQPRIQRCLGA-RYDRERLGRPQGRWT 608
           LQPRI RC GA RYD  +  R  GR T
Sbjct: 210 LQPRISRCPGARRYDMHK-ARESGRET 235


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +2

Query: 203  RKYVKLIYRNYNLALKLVPQPIPRMREFYGDGVDKHTELVSWKFITLWENNRVYFKAHNT 382
            RK    I R Y   + +      RM EFY D +DK+ +   ++ I + + + +Y    N 
Sbjct: 1266 RKRQVTINRPYQCGIAVYQLAKLRMLEFYYDFLDKYVDRKDFELIQM-DTDSLYMALSNX 1324

Query: 383  KYNQYLK 403
              ++ +K
Sbjct: 1325 NLDEIIK 1331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,460,011
Number of Sequences: 59808
Number of extensions: 434503
Number of successful extensions: 1578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)