Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1362
         (728 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021252-1|AAX33400.1|  553|Drosophila melanogaster RE60459p pro...    29   4.9  
AE014297-2215|AAN13711.1|  698|Drosophila melanogaster CG14897-P...    29   4.9  
AE014297-2214|AAF55320.1| 1298|Drosophila melanogaster CG14897-P...    29   4.9  
AY089585-1|AAL90323.1|  588|Drosophila melanogaster RE12138p pro...    29   6.5  
AL121806-4|CAB65881.1|  588|Drosophila melanogaster EG:BACR42I17...    29   6.5  
AE014298-155|AAF45587.1|  588|Drosophila melanogaster CG11384-PA...    29   6.5  

>BT021252-1|AAX33400.1|  553|Drosophila melanogaster RE60459p
           protein.
          Length = 553

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 529 IYNREFNDALEL-DTIVNASGDRKAVGHDGEVSGLPEIYSW 648
           IYN+   D + L D  ++A+G R  + H G+++   ++Y+W
Sbjct: 61  IYNKSSGDPIHLNDVAIHAAGKRPLL-HGGKITIRDKVYTW 100


>AE014297-2215|AAN13711.1|  698|Drosophila melanogaster CG14897-PA,
           isoform A protein.
          Length = 698

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 529 IYNREFNDALEL-DTIVNASGDRKAVGHDGEVSGLPEIYSW 648
           IYN+   D + L D  ++A+G R  + H G+++   ++Y+W
Sbjct: 61  IYNKSSGDPIHLNDVAIHAAGKRPLL-HGGKITIRDKVYTW 100


>AE014297-2214|AAF55320.1| 1298|Drosophila melanogaster CG14897-PB,
           isoform B protein.
          Length = 1298

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 529 IYNREFNDALEL-DTIVNASGDRKAVGHDGEVSGLPEIYSW 648
           IYN+   D + L D  ++A+G R  + H G+++   ++Y+W
Sbjct: 61  IYNKSSGDPIHLNDVAIHAAGKRPLL-HGGKITIRDKVYTW 100


>AY089585-1|AAL90323.1|  588|Drosophila melanogaster RE12138p
           protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 343 QGNELPTDEFSVLVNTIAVEFSHSRDWLWNE-LQSEVVVSVNE-LDVFPAMMSLKLNGKY 170
           +G +LPT       N I  EF  +   +W E  +  + V V E L V+      K N  Y
Sbjct: 138 KGLKLPTVRILATANQIDNEFPPTHCQMWFEGYRQPIFVPVAEFLSVWVEAWGNKPNLNY 197

Query: 169 FLTISCPLPT 140
              +SCP+P+
Sbjct: 198 PHLLSCPVPS 207


>AL121806-4|CAB65881.1|  588|Drosophila melanogaster EG:BACR42I17.3
           protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 343 QGNELPTDEFSVLVNTIAVEFSHSRDWLWNE-LQSEVVVSVNE-LDVFPAMMSLKLNGKY 170
           +G +LPT       N I  EF  +   +W E  +  + V V E L V+      K N  Y
Sbjct: 138 KGLKLPTVRILATANQIDNEFPPTHCQMWFEGYRQPIFVPVAEFLSVWVEAWGNKPNLNY 197

Query: 169 FLTISCPLPT 140
              +SCP+P+
Sbjct: 198 PHLLSCPVPS 207


>AE014298-155|AAF45587.1|  588|Drosophila melanogaster CG11384-PA
           protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 343 QGNELPTDEFSVLVNTIAVEFSHSRDWLWNE-LQSEVVVSVNE-LDVFPAMMSLKLNGKY 170
           +G +LPT       N I  EF  +   +W E  +  + V V E L V+      K N  Y
Sbjct: 138 KGLKLPTVRILATANQIDNEFPPTHCQMWFEGYRQPIFVPVAEFLSVWVEAWGNKPNLNY 197

Query: 169 FLTISCPLPT 140
              +SCP+P+
Sbjct: 198 PHLLSCPVPS 207


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,068,827
Number of Sequences: 53049
Number of extensions: 645552
Number of successful extensions: 1984
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1984
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)