Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1362
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078783-5|AAC26922.1|  236|Caenorhabditis elegans Hypothetical ...    30   1.5  
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    30   1.9  

>AF078783-5|AAC26922.1|  236|Caenorhabditis elegans Hypothetical
           protein H10E21.4 protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = -3

Query: 576 HDRIELQGIVEFAVVDEEQDVVLYLAGWKNHCSLVLSALLPPYTTRSRALQL 421
           +DRI + GI+  A  D  +D  L  A +KNH S    +L P    R++ALQL
Sbjct: 114 NDRI-IDGILSIA--DTNRDGQLTYAEFKNHLSSGAKSLSPAEEQRNQALQL 162


>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
           protein Y18H1A.3 protein.
          Length = 1258

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 28/99 (28%), Positives = 41/99 (41%)
 Frame = -3

Query: 651 EPRVDFRKTGDFTVVSNGLAVSRGVHDRIELQGIVEFAVVDEEQDVVLYLAGWKNHCSLV 472
           +PR D  +TGD    SN +A     HD  ++      AV     D + +L  W+   SLV
Sbjct: 514 DPRNDSSETGDSMSSSNTIAEDNVFHDTDDITN----AVTSWSGDKLAWLQTWRRVISLV 569

Query: 471 LSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTL 355
                 PYT  S  + +    L  +  L + L  L + L
Sbjct: 570 -----DPYTNSSAHVAIDCMSLTIENLLLVNLHPLAHWL 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,983
Number of Sequences: 27780
Number of extensions: 321220
Number of successful extensions: 969
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)