Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1362
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.18 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.55 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.55 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.55 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.55 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   0.97 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   0.97 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 524 NRTSFCTWRAGRTIAPWCCQ 465
           NR S+CTW    T +P  C+
Sbjct: 7   NRPSYCTWELNATNSPHTCR 26


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 215 KLIYRNYNLALKLVPQPIP 271
           KL Y+NY + ++ +P P+P
Sbjct: 103 KLYYKNYIINIEQIPVPVP 121


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 215 KLIYRNYNLALKLVPQPIP 271
           KL Y+NY + ++ +P P+P
Sbjct: 114 KLYYKNYIINIEQIPVPVP 132


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 215 KLIYRNYNLALKLVPQPIP 271
           KL Y+NY + ++ +P P+P
Sbjct: 344 KLYYKNYIINIEQIPVPVP 362


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 215 KLIYRNYNLALKLVPQPIP 271
           KL Y+NY + ++ +P P+P
Sbjct: 339 KLYYKNYIINIEQIPVPVP 357


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 194 HHGRKYVKLIYRNYNLALKLVPQPIP 271
           ++   Y KL Y+NY + ++ +P P+P
Sbjct: 108 NYNNNYKKL-YKNYIINIEQIPVPVP 132


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 194 HHGRKYVKLIYRNYNLALKLVPQPIP 271
           ++   Y KL Y+NY + ++ +P P+P
Sbjct: 108 NYNNNYKKL-YKNYIINIEQIPVPVP 132


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 6   GDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKL 137
           G YD+ +R S E  + G   +  N+    I      TMEY  +L
Sbjct: 41  GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 675 SGRLERCNEPRVDFRK 628
           SG+LER  E R+  RK
Sbjct: 554 SGKLERTEEQRIALRK 569


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 675 SGRLERCNEPRVDFRK 628
           SG+LER  E R+  RK
Sbjct: 592 SGKLERTEEQRIALRK 607


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 388 QPVLEDEYVDLQLQRSG 438
           +PV+ +E VD  L++SG
Sbjct: 168 KPVVAEETVDYMLEKSG 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,954
Number of Sequences: 438
Number of extensions: 4284
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)