Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1362
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    35   0.064
At3g20020.1 68416.m02533 protein arginine N-methyltransferase fa...    31   1.0  
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    30   1.4  
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot...    29   3.2  
At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3...    29   4.2  
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3...    29   4.2  
At5g01400.1 68418.m00053 expressed protein contains low similari...    27   9.6  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 90  LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 188
           +++D +    EY  KL + +G D   KYFPL+F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At3g20020.1 68416.m02533 protein arginine N-methyltransferase
           family protein similar to SP|Q96LA8 Protein arginine
           N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens}
          Length = 435

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 621 DFTVVSNGLAVSRGVHDR-IELQGIVEFAVVDEEQDVVLYLAGWKNHCSLVLSALLPPYT 445
           D  V +  +  + G+ D+ I L G VE   +DEE DV+  ++ W  +  L  S L    T
Sbjct: 151 DIAVQAKEVVKANGLSDKVIVLHGRVEDVEIDEEVDVI--ISEWMGYMLLYESMLGSVIT 208

Query: 444 TRSRALQ 424
            R R L+
Sbjct: 209 ARDRWLK 215


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 90  LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 188
           +++D +    +Y  KL + +G D   K+FPL+F
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411


>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains InterPro Entry
           IPR001087 Lipolytic enzyme, G-D-S-L family
          Length = 379

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 387 YLVLWALKYTLLFSHKVMNFQLTSSVCLSTPSP*NSLIRGIGCGTSFRA 241
           Y+ ++++K  L+ +H    F  +  VC  T  P  +    +GCG + R+
Sbjct: 281 YVDIFSIKSDLILNHSKYGFDHSIMVCCGTGGPPLNYDDQVGCGKTARS 329


>At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3.5)
           plant glutamate receptor family, PMID:11379626
          Length = 895

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 233 YNLALKLVPQPIPRMREFYGDG 298
           +  A++L+P P+PR    YGDG
Sbjct: 460 FEAAIQLLPYPVPRTYILYGDG 481


>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
           plant glutamate receptor family, PMID:11379626
          Length = 959

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 233 YNLALKLVPQPIPRMREFYGDG 298
           +  A++L+P P+PR    YGDG
Sbjct: 525 FEAAIELLPYPVPRTYILYGDG 546


>At5g01400.1 68418.m00053 expressed protein contains low similarity
           to symplekin SP:Q92797 from [Homo sapiens]
          Length = 1467

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 128 LQAVGRQRTGYCQKVLPIKL*THHGRKYVKLIY-RNYNLALKLV 256
           L +V ++R  YC ++LP+ L +     ++K +Y    NLALK V
Sbjct: 235 LSSVAKKRPAYCGRILPVLL-SLDPLSFLKGVYAAATNLALKTV 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,465
Number of Sequences: 28952
Number of extensions: 296129
Number of successful extensions: 845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)