Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1358
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   1.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   1.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   3.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.7  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 176 WDPKDGELCLVRSKSGETLMEDRSDSACKSIVGTGYRGERLIEPSSSWFRPKF 334
           ++P+  E+ L  ++S E  ME    ++      T Y   +L+E    + R K+
Sbjct: 57  FEPQQFEVSLSENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRSKY 109


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 176 WDPKDGELCLVRSKSGETLMEDRSDSACKSIVGTGYRGERLIEPSSSWFRPKF 334
           ++P+  E+ L  ++S E  ME    ++      T Y   +L+E    + R K+
Sbjct: 77  FEPQQFEVSLSENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRSKY 129


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/63 (23%), Positives = 24/63 (38%)
 Frame = -1

Query: 312 LDGSISLSPLYPVPTIDLHAESLRSSIRVSPDFDLTRHSSPSFGSQHLCSERAFIH*LET 133
           +D S + S  +   T D H  S  +   + P   L+     + G +HL   R     L  
Sbjct: 561 IDESSNSSNYFANKTYDFHNMSFENDFIIQPKHLLSIARQVALGMEHLAKTRVVHRDLAA 620

Query: 132 RRL 124
           R +
Sbjct: 621 RNV 623


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -1

Query: 714 QNASAPSIFRAG--CFGR*VVAHSLADSDFHGHRPAVMSDQRLS 589
           + A AP++  AG     R       A    H HRPA+   +R++
Sbjct: 274 ERAPAPAVRAAGDAAAARGAARADGAGGPLHDHRPALAQQRRVA 317


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 617 GRWPWKSESAKECATTHLPKQPAL 688
           GR  WK    +  AT  L K P+L
Sbjct: 79  GRKAWKHLDFRNSATAELLKNPSL 102


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 617 GRWPWKSESAKECATTHLPKQPAL 688
           GR  WK    +  AT  L K P+L
Sbjct: 79  GRKAWKHLDFRNSATAELLKNPSL 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,939
Number of Sequences: 336
Number of extensions: 4239
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)