Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1355
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    27   1.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.1  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    26   4.1  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   7.2  

>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 263 TTAPHPSNRNALLLHGRNRQGSGTHP 186
           TT PHP N   ++L G N Q     P
Sbjct: 94  TTDPHPDNSKIVILMGSNFQNDANSP 119


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 378 GGRAHSPPGVKWLLEPIDIYN 316
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 263 TTAPHPSNRNALLLHGRNRQGSGTHP 186
           T  PHP N   +LL G N Q   + P
Sbjct: 94  TLNPHPENSKIVLLMGSNAQNDPSSP 119


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 375 HPSKQ*KKYWNHNYTLVFYICLLNIF 452
           HP+     +W   +++VF  CL+ I+
Sbjct: 68  HPAHPQNWHWAKRWSIVFMFCLMQIY 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,523
Number of Sequences: 5004
Number of extensions: 52245
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)