Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1355
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         28   7.4  
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    28   7.4  
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794...    27   9.8  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 251 HPSNRNALLLHGRNRQGSGTHPRGLTRGPTTS 156
           H ++    LL GR R G G H RGL   P  S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313


>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 567 YYTSASKTPNCSPLYIIT*S*KDKIQIITCFVFAS 463
           Y  S+ KT    PL  I    +D IQ   CFVFA+
Sbjct: 682 YMRSSKKTIQNYPLIFIDGPKQDNIQTYPCFVFAN 716


>11_02_0065 -
           7938007-7938393,7939292-7939435,7940597-7940665,
           7940762-7940809,7941488-7941584,7941688-7941767,
           7941841-7941912,7942256-7942350,7943903-7943984,
           7945176-7945209,7945255-7945262,7945657-7946058
          Length = 505

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 10  YNYTGTXMLEYHNHLQHKH 66
           Y+Y       YHNH QH H
Sbjct: 404 YHYHNNNQQSYHNHQQHNH 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,916,054
Number of Sequences: 37544
Number of extensions: 303793
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)