Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1354
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    27   0.11 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.3  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   9.1  

>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 148 MKIRFCIFIHSRRINRCNFSQFFXXXXXXXXLLCSS 255
           M  R CI I S R N  NFS+F         LL SS
Sbjct: 1   MSTRICIPISSGRTNGSNFSKFINCHYTSGHLLGSS 36


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 357 TKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSRLIYFMKYNFF 494
           T N+     YW      + +     +N +T      ++ FMKY+FF
Sbjct: 47  TYNNTNRKYYWLNVCCLNLSIVTIFFNFATKKLEQFIVRFMKYHFF 92


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 514 REYMNLMKKLYFMKYMSLDNLNIVEVFQLNLKNV 413
           REY+    +LYF  Y +     IV +F+   +N+
Sbjct: 143 REYLAEAVQLYFQFYYTYFLCVIVCIFRGKYRNI 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,042
Number of Sequences: 336
Number of extensions: 2211
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)