Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1354
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   114   1e-26
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   9.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  114 bits (274), Expect = 1e-26
 Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
 Frame = +2

Query: 2   HIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN-PNIL*RLGFVFLFT 178
           H+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT
Sbjct: 297 HLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFT 356

Query: 179 VGGLTGVILANSSIDITLHDTYYVVVIF 262
           +GGLTGVIL+NS +DI  HDTY+VV  F
Sbjct: 357 IGGLTGVILSNSVLDIAFHDTYFVVAHF 384



 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 40/86 (46%), Positives = 51/86 (59%)
 Frame = +1

Query: 253 SHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLXSYILKIQFFTIFIGVNITFFPQHFLGLA 432
           +HFHYVLS               P   GL     +  IQF+ +FIGVNI F PQHFLGL 
Sbjct: 382 AHFHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLN 440

Query: 433 GIPRRYSDYPDSYIS*NIISSLGSYI 510
           G+PRR  DYP++++  N +SS+GS I
Sbjct: 441 GMPRRIPDYPEAFVGWNFVSSIGSVI 466


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 514 REYMNLMKKLYFMKYMSLDNLNIVEVFQLNL 422
           R Y+ L KK +    +S D    ++V +LNL
Sbjct: 357 RNYIKLYKKKFLAVQLSADESKELDVLELNL 387


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 188 LTGVILANSSIDITLHDTYYVV 253
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 517 NREYMNLMKKLYFMKYMSLDNLNIVEVFQLNLKNVVEKM 401
           N+ Y   + KL F KY++    +   ++  NL  + EK+
Sbjct: 848 NKIYQEQLDKLNFQKYLNESKCSHSPIYGSNLIRLAEKL 886


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,540
Number of Sequences: 5004
Number of extensions: 35817
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)