Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1354
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  116   2e-26
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   6e-15
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   9e-06
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   9e-06
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   7.9  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  116 bits (278), Expect = 2e-26
 Identities = 53/81 (65%), Positives = 68/81 (83%)
 Frame = +2

Query: 20  IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 199
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 200 ILANSSIDITLHDTYYVVVIF 262
           ILANSS+D+ +HDTYYVV  F
Sbjct: 61  ILANSSLDVVMHDTYYVVAHF 81



 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/86 (50%), Positives = 50/86 (58%)
 Frame = +1

Query: 253 SHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLXSYILKIQFFTIFIGVNITFFPQHFLGLA 432
           +HFHYVLS              +   TG        KI F+ +FIGVNITFFPQHFLGLA
Sbjct: 79  AHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLA 138

Query: 433 GIPRRYSDYPDSYIS*NIISSLGSYI 510
           G PRRYSD+ D Y   N++ S GS I
Sbjct: 139 GFPRRYSDFADGYAGWNLVCSFGSTI 164



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 600 SIE*YQNLPPAEHSYNELPIL 662
           S+E  Q  PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 36/60 (60%), Positives = 41/60 (68%)
 Frame = +1

Query: 331 TGLSLXSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NIISSLGSYI 510
           TG        KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D Y   N++ S GS I
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 78



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 600 SIE*YQNLPPAEHSYNELPIL 662
           S+E  Q  PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = +1

Query: 415 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYI 510
           HFLGLAG PRRYSD+ D Y   N++ S GS I
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 32



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 600 SIE*YQNLPPAEHSYNELPIL 662
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = +1

Query: 415 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYI 510
           HFLGLAG PRRYSD+ D Y   N++ S GS I
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 32


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = +1

Query: 415 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYI 510
           HFLGLAG PRRYSD+ D Y   N++ S GS I
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 32



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 600 SIE*YQNLPPAEHSYNELPIL 662
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = +1

Query: 415 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYI 510
           HFLGLAG PRRYSD+ D Y   N++ S GS I
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 32



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 600 SIE*YQNLPPAEHSYNELPIL 662
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = +1

Query: 415 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYI 510
           HFLGLAG PRRYSD+ D Y   N++ S GS I
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 32



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 600 SIE*YQNLPPAEHSYNELPIL 662
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = +1

Query: 415 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYI 510
           HFLGLAG PRRYSD+ D Y   N++ S GS I
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 32



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 600 SIE*YQNLPPAEHSYNELPIL 662
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 589 ISHHQLNDIKIYHQQNIHIMNYQF 660
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,087
Number of Sequences: 59808
Number of extensions: 216033
Number of successful extensions: 367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)