Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1354
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-10|AAD14693.2|  352|Caenorhabditis elegans Seven tm rec...    31   0.56 
AC006722-16|AAK68409.2|  308|Caenorhabditis elegans Hypothetical...    31   0.56 
AF125952-7|AAD14695.1|  352|Caenorhabditis elegans Seven tm rece...    30   1.3  
AC006722-13|AAK68415.2|  352|Caenorhabditis elegans Hypothetical...    30   1.3  
AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    29   3.0  

>AF125952-10|AAD14693.2|  352|Caenorhabditis elegans Seven tm
           receptor protein 257 protein.
          Length = 352

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 330 YRPFIKXLYTKNSIFY--NIYWSKYNIFSTTFFRFSWNTSTI 449
           Y P +K L T N ++Y   ++W KY   STT   FSW  + +
Sbjct: 165 YPPLVKNLSTINDLYYVGPLFWPKY-ANSTTDHFFSWKAARL 205


>AC006722-16|AAK68409.2|  308|Caenorhabditis elegans Hypothetical
           protein Y19D10A.1 protein.
          Length = 308

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 330 YRPFIKXLYTKNSIFY--NIYWSKYNIFSTTFFRFSWNTSTI 449
           Y P +K L T N ++Y   ++W KY   STT   FSW  + +
Sbjct: 147 YPPLVKNLSTINDLYYVGPLFWPKY-ANSTTDHFFSWKAARL 187


>AF125952-7|AAD14695.1|  352|Caenorhabditis elegans Seven tm
           receptor protein 258 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 330 YRPFIKXLYTKNSIFY--NIYWSKYNIFSTTFFRFSWNTS 443
           Y P +K L T N ++Y   ++W KY    T  F FSW  +
Sbjct: 165 YPPLVKNLSTINDLYYVGPLFWPKYANSMTEHF-FSWKAA 203


>AC006722-13|AAK68415.2|  352|Caenorhabditis elegans Hypothetical
           protein Y19D10A.2 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 330 YRPFIKXLYTKNSIFY--NIYWSKYNIFSTTFFRFSWNTS 443
           Y P +K L T N ++Y   ++W KY    T  F FSW  +
Sbjct: 165 YPPLVKNLSTINDLYYVGPLFWPKYANSMTEHF-FSWKAA 203


>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 372 FYNIYWSKYNIFSTTF 419
           F+NIYWS Y IF  TF
Sbjct: 11  FFNIYWSFYAIFGFTF 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,027,088
Number of Sequences: 27780
Number of extensions: 187888
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)